Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2285 491 1e-136 seq704 477 3e-132 seq4651 343 4e-92 seq3500 145 2e-32 seq4168 113 1e-22 >seq2285 Length=5733 Score = 491 bits (544), Expect = 1e-136 Identities = 418/509 (82%), Gaps = 11/509 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| ||| || |||| | || ||||| | |||||||||| Sbjct 1007 GTACTCATTCCAATTACCGGACTTGAA---GCCCAGCATTGTTATTTTTCGTCACTACCT 1063 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1064 CCCCGTGCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 1123 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||| Sbjct 1124 TCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCTCCGTTACCCGTTACAACCATGGTA 1183 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||| | ||||||||||||||||||||||||||| ||||||| || | |||| || Sbjct 1184 GGCATGTCACCTACCATCGAAAGTTGATAGGGCAGACATTTGAAAGATACGCCGCCAGCG 1243 Query 241 CAAGGCCATGCGATTCG-TTAAGTTATTATGA---ATCACCAAGGAGCCCCGAAGGGCGT 296 |||||||||||| | | ||||||| || ||||| || |||||| | Sbjct 1244 CAAGGCCATGCGGTCGGCAAAAGTTATCCAGAGTCATCACAAAAACAGACCGAAGTCTGA 1303 Query 297 TGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCT 356 | | |||| |||||||||| | ||||| | |||| ||| | | ||||||||||||| Sbjct 1304 TTGATTTTGATCTAATAAAAGCGCCCCTCCGTAAGTTAGGGCTAGTTGCATGTATTAGCT 1363 Query 357 CTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTA 416 ||||||||||||| ||||||||||||| || | || ||| ||||||| |||||||||||| Sbjct 1364 CTAGAATTACCACAGTTATCCATGTAG-AACGCACGATCTAATAAACCATAACTGATTTA 1422 Query 417 ATGAGCCATTCGCAGTTTCACTGT-ATAGATTGCTTATACTTAGACATGCATGGCTTAAT 475 ||||||||||||| |||||||||| | | || | ||||||||||||||||||||||| Sbjct 1423 ATGAGCCATTCGCGGTTTCACTGTGCCACAGTG--TGTACTTAGACATGCATGGCTTAAT 1480 Query 476 CTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||| |||| |||||||| Sbjct 1481 CTTTGAGACAAGCATGTGACAACTGGCAG 1509 >seq704 Length=136093 Score = 477 bits (528), Expect = 3e-132 Identities = 422/517 (82%), Gaps = 14/517 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||||||||| | || | || ||| || |||| ||||| | ||||||||| Sbjct 34424 GTACTCATTCCAATTACGGGGCCTCGAATGAGTCCCGTATTGTTATTTTTCGTCACTACC 34483 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 ||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 34484 TCCGCGTGTCGCGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 34543 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 34544 TTCTCATGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACAACCATGGT 34603 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | | ||||||||||||||||||||||| | | ||||| || | ||||||| Sbjct 34604 AGGCATATCACGTACCATCGAAAGTTGATAGGGCACACACTTGAAAGATACGTCGCCGGG 34663 Query 240 TCAAGGCCATGCGATTCGTT--AAGTTATTATGAATCACCAA--GGA--GCCCCGAAGG- 292 ||||| || |||||| || | ||||||| || ||||||| | | |||||||| Sbjct 34664 TCAAGCCCGTGCGATCCGCTCAAAGTTATCCAGAGTCACCAAACGTACGAACCCGAAGGC 34723 Query 293 GCGTTGGTTTTTTATCTAATAAATACACCCCTT--CCGAA--GTCGG-GGTTTTTAGCAT 347 || | | |||| |||||||||| | | | || ||||| ||||| | || | |||| Sbjct 34724 CCGATTGGTTTTGATCTAATAAACGCGCTCTTTCCCCGAAGGGTCGGAGCTTGCTTGCAT 34783 Query 348 GTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATA 407 |||||||||||||||||||||| |||||||| |||| | |||| ||| || ||| || Sbjct 34784 GTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATTGTACGATCCAAGAAATCATG 34843 Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCAT 467 ||| ||||||||||||||||| |||||||| || | | || | ||||||||||||| Sbjct 34844 GGTGACCTAATGAGCCATTCGCAGCTTCACTGTGTA-AAAGTTTGTGCTTAGACATGCAT 34902 Query 468 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||| Sbjct 34903 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 34939 >seq4651 Length=1565268 Score = 343 bits (380), Expect = 4e-92 Identities = 399/533 (75%), Gaps = 34/533 (6%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 || ||||||||||||| | | | ||| || || |||| ||||| | | ||||||| Sbjct 490339 GTCCTCATTCCAATTATGGGGTCTCGAAATAGTCCCGTATTGTTATTTTTCGGCACTACC 490398 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 490399 TCCCCGTGCCGGGAGTGGGTAAGTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 490458 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||| ||| |||||||||||||||||||| ||||||||||||||||| | |||||| Sbjct 490459 TTCTCATGCTGCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACAAACATGGT 490518 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | | ||||||||| | |||||| |||||| ||||||| || | |||||||| Sbjct 490519 AGGCATATCACGTACCATCGACATTTGATAAGGCAGACATTTGAAAGATGCGTCGCCGGC 490578 Query 240 TC-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAA---GGA----------GCC 285 | |||||| | | | ||||||| || ||||||| ||| || Sbjct 490579 ACAAAGGCC---CAAAGCACAAAGTTATCCAGAGTCACCAATGGGGACACCGCGCTTCCC 490635 Query 286 CCGAAG-------GGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC----GAAGTCG 334 ||||| ||| | | |||| | |||||||| | | |||| ||| | Sbjct 490636 ACGAAGAGCACGCTGCGATTGGTTTTGAACTAATAAAAGTGCTCTTTCCAATAAAAGGTG 490695 Query 335 GGGTTT--TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACT 392 | | || | |||||||||||||||||||||| |||| | ||| || ||| | || Sbjct 490696 GAGCTTGGTAAGCATGTATTAGCTCTAGAATTGCCACAGGTATTCAAATAGGATCGTGTC 490755 Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGT-ATAGATTGCTT 451 ||| || ||| |||||||||||||||||||||| ||||| | || | | | || | Sbjct 490756 ATCTAAGGAACCTCGACTGATTTAATGAGCCATTCGCGGTTTCGCCGTCAAACAGTG--T 490813 Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 490814 GAACCTAGACATTCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 490866 >seq3500 Length=528000 Score = 145 bits (160), Expect = 2e-32 Identities = 130/162 (80%), Gaps = 1/162 (1%) Strand=Plus/Minus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 ||||||||||||| |||||||| |||| |||||||| |||| || ||| || || Sbjct 272669 AGCATGTATTAGCCCTAGAATTGCCACCGTTATCCAAGTAGGCTCGTGTCATCTAAGGAA 272610 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACA 462 | |||||||||||| ||||||| || ||||||| || | | | | ||||||||| Sbjct 272609 CCTCAACTGATTTAATTAGCCATTTGCGGTTTCACCATAAA-ACAGAGTGAACTTAGACA 272551 Query 463 TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||| |||||||||||||||||||||||||||||||||| Sbjct 272550 TGCATGATTTAATCTTTGAGACAAGCATATGACTACTGGCAG 272509 >seq4168 Length=899199 Score = 113 bits (124), Expect = 1e-22 Identities = 87/102 (85%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||||||||| | || | |||||| || |||| ||||| | ||||||||| Sbjct 150856 GTACTCATTCCAATTACGGGGCCTCGAAAGAGTCCCGTATTGTTATTTTTCGTCACTACC 150915 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTC 101 |||||||| ||||| ||||||| ||||||||||||||||||| Sbjct 150916 TCCCCGTGCCGGGAGTGGGTAAGTTGCGCGCCTGCTGCCTTC 150957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510327153408