Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1700 152 4e-32 seq4695 114 1e-20 >seq1700 Length=809593 Score = 152 bits (168), Expect = 4e-32 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 66262 TTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACC 66321 ||||||||| || || | ||| | |||||| | | ||||||||||| | ||| || || Sbjct 377248 TTCACCCCAAACATCTGCCAGTCCTGGACATTCATTGGGACACATCAGAGTCCAGTCTCC 377189 Query 66322 ATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCG 66381 || ||| |||||||| ||||| || |||||||| |||||||| || ||||| ||||| | Sbjct 377188 ATTCTGCTCTACACGCCGCATGAAGAGATCAGGGATCCAGAGAGCATAGAAAAGATCTCT 377129 Query 66382 TGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGC 66441 ||||| ||||| || | || |||||| ||| || || || |||||||| || || Sbjct 377128 TGCTCTCTGCTCTTCTTTCCCTGTATTTTTCTTCAAATCAAGAAAGTCAAAGATATCCGC 377069 Query 66442 ATGCCATGGTTCCAGGTAGATGGCGAA 66468 ||||||||| || || ||||| || || Sbjct 377068 ATGCCATGGCTCTAGATAGATTGCAAA 377042 >seq4695 Length=2473718 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 |||||| | || |||| || ||| | | || || ||||||||||| |||| | || Sbjct 1458064 GAACCCTTGCTGAAAGAAAACCCTGGAAGATTTGTCTTGTTCCCCATTCAGTACCATGAC 1458005 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| ||||||||||| || || ||||| |||||||| | || ||||| ||||| Sbjct 1458004 ATCTGGCAGATGTACAAAAAAGCAGAGGCTTCATTCTGGACAGCAGAAGAGGTGGATTTA 1457945 Query 61147 TCCAAAGACATGAATGACTGGG---AGCGTTTATCGAGCGGTGAACAACATTTCATTAAA 61203 || |||||| | || | |||| ||| | | | | | |||| ||||||| ||| Sbjct 1457944 TCTAAAGACCTTGATCAGTGGGAAAAGC-TGAAACCA--GATGAAAAACATTTTATTTCC 1457888 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTT 61253 ||||| | || |||||||| || || || || |||||||||||||| Sbjct 1457887 CATGTCCTTGCATTCTTTGCAGCAAGTGATGGGATAGTCAATGAGAATTT 1457838 Score = 86.0 bits (94), Expect = 5e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTC 61332 ||||| || ||| | ||||| |||||||| || || || || ||||||||||| ||||| Sbjct 1457696 GAGGTTCAGGTGACAGAGGCTCGTTGTTTTTATGGTTTTCAAATTGCCATGGAAAATGTG 1457637 Query 61333 CACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 ||| |||||||| ||| | || || ||||| ||||||| Sbjct 1457636 CACAGTGAGATGTATAGTTTACTTATTGATACCTACATCA 1457597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397544630828720