Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq30 223 5e-56 seq17 223 5e-56 seq197 80.6 4e-13 >seq30 Length=21282 Score = 223 bits (246), Expect = 5e-56 Identities = 191/228 (84%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 3057 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 3114 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAG-ATT 119 |||||| | || | | |||| ||| | || ||||| ||||||| | | ||||| | ||| Sbjct 3115 CTCGTTCATGAGCGATAATTACAAAGCTCAATCCCAATCACGAAGGAGTTTCATCGGATT 3174 Query 120 ACCCGGACCTGTCGGCCAAGGT-GATAGA-CTCGTTGAATACATCAGTGTAGCGCGCGTG 177 ||| | ||| |||||||||| || | | | |||||| | | ||||||||||||||||| Sbjct 3175 CCCCAGGCCTTCCGGCCAAGGTAGAGAAAGCACGTTGATTCCTTCAGTGTAGCGCGCGTG 3234 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||| | |||||||||||||||||||||||||||||| ||||| || Sbjct 3235 CGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 3281 Score = 223 bits (246), Expect = 5e-56 Identities = 191/228 (84%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 12275 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 12332 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAG-ATT 119 |||||| | || | | |||| ||| | || ||||| ||||||| | | ||||| | ||| Sbjct 12333 CTCGTTCATGAGCGATAATTACAAAGCTCAATCCCAATCACGAAGGAGTTTCATCGGATT 12392 Query 120 ACCCGGACCTGTCGGCCAAGGT-GATAGA-CTCGTTGAATACATCAGTGTAGCGCGCGTG 177 ||| | ||| |||||||||| || | | | |||||| | | ||||||||||||||||| Sbjct 12393 CCCCAGGCCTTCCGGCCAAGGTAGAGAAAGCACGTTGATTCCTTCAGTGTAGCGCGCGTG 12452 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||| | |||||||||||||||||||||||||||||| ||||| || Sbjct 12453 CGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 12499 >seq17 Length=777369 Score = 223 bits (246), Expect = 5e-56 Identities = 191/228 (84%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 770150 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 770093 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAG-ATT 119 |||||| | || | | |||| ||| | || ||||| ||||||| | | ||||| | ||| Sbjct 770092 CTCGTTCATGAGCGATAATTACAAAGCTCAATCCCAATCACGAAGGAGTTTCATCGGATT 770033 Query 120 ACCCGGACCTGTCGGCCAAGGT-GATAGA-CTCGTTGAATACATCAGTGTAGCGCGCGTG 177 ||| | ||| |||||||||| || | | | |||||| | | ||||||||||||||||| Sbjct 770032 CCCCAGGCCTTCCGGCCAAGGTAGAGAAAGCACGTTGATTCCTTCAGTGTAGCGCGCGTG 769973 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||| | |||||||||||||||||||||||||||||| ||||| || Sbjct 769972 CGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 769926 >seq197 Length=1033 Score = 80.6 bits (88), Expect = 4e-13 Identities = 49/51 (96%), Gaps = 1/51 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACT 51 |||||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 983 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACT 1032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751998543000