Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq173 242 7e-62 seq30 242 7e-62 seq17 242 7e-62 >seq173 Length=1097 Score = 242 bits (268), Expect = 7e-62 Identities = 229/286 (80%), Gaps = 7/286 (2%) Strand=Plus/Plus Query 37 GCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTG 96 |||||||||||||||||||||| || || | || ||||||||||||||||||||||| Sbjct 418 GCATGCCCTTCACTGGGTGTGCTTGGCGACCGGAACGTTTACTTTGAAAAAATTAGAGTG 477 Query 97 TTCAAAGCAGGCCTTTG--CTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 ||||||||||| | || || | ||| |||||||||||||||||||||| | ||| Sbjct 478 CTCAAAGCAGGCGTATGGCCTTGCATAATGGTGCATGGAATAATAGAATAGGACCT-CGG 536 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCC--GTAATGATTAATAGGGATAGTCGGGGGTGT 212 ||||||||||||||||| | ||| | | ||||||||||||||| | || |||||| | Sbjct 537 TTCTATTTTGTTGGTTT-TCGGAGCTCGAGGTAATGATTAATAGGAACAGACGGGGGCAT 595 Query 213 CAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAG 272 ||||| || ||||||||||||||||||| ||||| ||||||||||||| Sbjct 596 TCGTATTGCGGCGTTAGAGGTGAAATTCTTGGATCGTCGCAAGACGCACTACTGCGAAAG 655 Query 273 CGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 | || ||||| |||||||||||||||| ||||||||||||| || Sbjct 656 CATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGTTAGAGG 700 >seq30 Length=21282 Score = 242 bits (268), Expect = 7e-62 Identities = 229/286 (80%), Gaps = 7/286 (2%) Strand=Plus/Minus Query 37 GCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTG 96 |||||||||||||||||||||| || || | || ||||||||||||||||||||||| Sbjct 3993 GCATGCCCTTCACTGGGTGTGCTTGGCGACCGGAACGTTTACTTTGAAAAAATTAGAGTG 3934 Query 97 TTCAAAGCAGGCCTTTG--CTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 ||||||||||| | || || | ||| |||||||||||||||||||||| | ||| Sbjct 3933 CTCAAAGCAGGCGTATGGCCTTGCATAATGGTGCATGGAATAATAGAATAGGACCT-CGG 3875 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCC--GTAATGATTAATAGGGATAGTCGGGGGTGT 212 ||||||||||||||||| | ||| | | ||||||||||||||| | || |||||| | Sbjct 3874 TTCTATTTTGTTGGTTT-TCGGAGCTCGAGGTAATGATTAATAGGAACAGACGGGGGCAT 3816 Query 213 CAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAG 272 ||||| || ||||||||||||||||||| ||||| ||||||||||||| Sbjct 3815 TCGTATTGCGGCGTTAGAGGTGAAATTCTTGGATCGTCGCAAGACGCACTACTGCGAAAG 3756 Query 273 CGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 | || ||||| |||||||||||||||| ||||||||||||| || Sbjct 3755 CATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGTTAGAGG 3711 Score = 242 bits (268), Expect = 7e-62 Identities = 229/286 (80%), Gaps = 7/286 (2%) Strand=Plus/Minus Query 37 GCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTG 96 |||||||||||||||||||||| || || | || ||||||||||||||||||||||| Sbjct 13211 GCATGCCCTTCACTGGGTGTGCTTGGCGACCGGAACGTTTACTTTGAAAAAATTAGAGTG 13152 Query 97 TTCAAAGCAGGCCTTTG--CTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 ||||||||||| | || || | ||| |||||||||||||||||||||| | ||| Sbjct 13151 CTCAAAGCAGGCGTATGGCCTTGCATAATGGTGCATGGAATAATAGAATAGGACCT-CGG 13093 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCC--GTAATGATTAATAGGGATAGTCGGGGGTGT 212 ||||||||||||||||| | ||| | | ||||||||||||||| | || |||||| | Sbjct 13092 TTCTATTTTGTTGGTTT-TCGGAGCTCGAGGTAATGATTAATAGGAACAGACGGGGGCAT 13034 Query 213 CAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAG 272 ||||| || ||||||||||||||||||| ||||| ||||||||||||| Sbjct 13033 TCGTATTGCGGCGTTAGAGGTGAAATTCTTGGATCGTCGCAAGACGCACTACTGCGAAAG 12974 Query 273 CGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 | || ||||| |||||||||||||||| ||||||||||||| || Sbjct 12973 CATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGTTAGAGG 12929 >seq17 Length=777369 Score = 242 bits (268), Expect = 7e-62 Identities = 229/286 (80%), Gaps = 7/286 (2%) Strand=Plus/Plus Query 37 GCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTG 96 |||||||||||||||||||||| || || | || ||||||||||||||||||||||| Sbjct 769214 GCATGCCCTTCACTGGGTGTGCTTGGCGACCGGAACGTTTACTTTGAAAAAATTAGAGTG 769273 Query 97 TTCAAAGCAGGCCTTTG--CTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 ||||||||||| | || || | ||| |||||||||||||||||||||| | ||| Sbjct 769274 CTCAAAGCAGGCGTATGGCCTTGCATAATGGTGCATGGAATAATAGAATAGGACCT-CGG 769332 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCC--GTAATGATTAATAGGGATAGTCGGGGGTGT 212 ||||||||||||||||| | ||| | | ||||||||||||||| | || |||||| | Sbjct 769333 TTCTATTTTGTTGGTTT-TCGGAGCTCGAGGTAATGATTAATAGGAACAGACGGGGGCAT 769391 Query 213 CAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAG 272 ||||| || ||||||||||||||||||| ||||| ||||||||||||| Sbjct 769392 TCGTATTGCGGCGTTAGAGGTGAAATTCTTGGATCGTCGCAAGACGCACTACTGCGAAAG 769451 Query 273 CGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 | || ||||| |||||||||||||||| ||||||||||||| || Sbjct 769452 CATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGTTAGAGG 769496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915198169600