Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq30 147 9e-33 seq17 147 9e-33 seq194 93.3 2e-16 >seq30 Length=21282 Score = 147 bits (162), Expect = 9e-33 Identities = 104/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 |||| ||||||||||||||||||||||||||| ||| ||||||||| ||||||||||| Sbjct 844 GTTGAGACCCGAAAGATGGTGAACTATGCCTGGGCAGGATGAAGCCAGGGGAAACTCTGG 785 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| || |||| ||||| ||||||||||||||||| | ||||||||||||||| Sbjct 784 TGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCTGACCTGGGTATAGGGGCGA 726 Score = 147 bits (162), Expect = 9e-33 Identities = 104/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 |||| ||||||||||||||||||||||||||| ||| ||||||||| ||||||||||| Sbjct 10062 GTTGAGACCCGAAAGATGGTGAACTATGCCTGGGCAGGATGAAGCCAGGGGAAACTCTGG 10003 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| || |||| ||||| ||||||||||||||||| | ||||||||||||||| Sbjct 10002 TGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCTGACCTGGGTATAGGGGCGA 9944 Score = 93.3 bits (102), Expect = 2e-16 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||||||| || | || || | || |||||| | | || || ||||||| Sbjct 1603 GAGTCGCCTTGTTTGCGAGTACAAGGTGAAGTCGGTGGTAAACTCCATCGAAGGCTAAAT 1544 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || | ||| ||| ||||||||| ||||||| |||| |||| |||||||||||||| | Sbjct 1543 AT-GACCACGAGTCCGATAGCGAACAAGTACCGTGAGGGAAAATTGAAAAGCACTTTGAA 1485 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198 |||||| ||| || ||||||| | | | ||| |||| Sbjct 1484 GAGAGAGCGAAACAGTGCGTGAAACCGCTTAGAGGCAAGC 1445 Score = 93.3 bits (102), Expect = 2e-16 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||||||| || | || || | || |||||| | | || || ||||||| Sbjct 10821 GAGTCGCCTTGTTTGCGAGTACAAGGTGAAGTCGGTGGTAAACTCCATCGAAGGCTAAAT 10762 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || | ||| ||| ||||||||| ||||||| |||| |||| |||||||||||||| | Sbjct 10761 AT-GACCACGAGTCCGATAGCGAACAAGTACCGTGAGGGAAAATTGAAAAGCACTTTGAA 10703 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198 |||||| ||| || ||||||| | | | ||| |||| Sbjct 10702 GAGAGAGCGAAACAGTGCGTGAAACCGCTTAGAGGCAAGC 10663 >seq17 Length=777369 Score = 147 bits (162), Expect = 9e-33 Identities = 104/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 |||| ||||||||||||||||||||||||||| ||| ||||||||| ||||||||||| Sbjct 772364 GTTGAGACCCGAAAGATGGTGAACTATGCCTGGGCAGGATGAAGCCAGGGGAAACTCTGG 772423 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| || |||| ||||| ||||||||||||||||| | ||||||||||||||| Sbjct 772424 TGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCTGACCTGGGTATAGGGGCGA 772482 Score = 93.3 bits (102), Expect = 2e-16 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||||||| || | || || | || |||||| | | || || ||||||| Sbjct 771605 GAGTCGCCTTGTTTGCGAGTACAAGGTGAAGTCGGTGGTAAACTCCATCGAAGGCTAAAT 771664 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || | ||| ||| ||||||||| ||||||| |||| |||| |||||||||||||| | Sbjct 771665 AT-GACCACGAGTCCGATAGCGAACAAGTACCGTGAGGGAAAATTGAAAAGCACTTTGAA 771723 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198 |||||| ||| || ||||||| | | | ||| |||| Sbjct 771724 GAGAGAGCGAAACAGTGCGTGAAACCGCTTAGAGGCAAGC 771763 >seq194 Length=1062 Score = 93.3 bits (102), Expect = 2e-16 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||||||| || | || || | || |||||| | | || || ||||||| Sbjct 616 GAGTCGCCTTGTTTGCGAGTACAAGGTGAAGTCGGTGGTAAACTCCATCGAAGGCTAAAT 675 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || | ||| ||| ||||||||| ||||||| |||| |||| |||||||||||||| | Sbjct 676 AT-GACCACGAGTCCGATAGCGAACAAGTACCGTGAGGGAAAATTGAAAAGCACTTTGAA 734 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198 |||||| ||| || ||||||| | | | ||| |||| Sbjct 735 GAGAGAGCGAAACAGTGCGTGAAACCGCTTAGAGGCAAGC 774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079995710000