Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq30 253 3e-65 seq17 253 3e-65 seq173 183 5e-44 >seq30 Length=21282 Score = 253 bits (280), Expect = 3e-65 Identities = 212/255 (83%), Gaps = 11/255 (4%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 3214 TCCTTCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG 3273 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC-----CAGCCACCAA 126 ||||| | || | ||||| | ||||||||||||||| | | ||| | Sbjct 3274 -CTCAATC-TCGTGCGATTGGAAATCGCCTGTCCCTCTAAGAAGCTGATAAAACAACCGA 3331 Query 127 CCATAGTCGATGG---GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACC 183 | | | ||| | |||||||||||||| || ||||||||||||||||||||||||| Sbjct 3332 CGCT-GCGGATCGGTTGGCTATTTAGCAGGCTAGAGTCTCGTTCGTTATCGGAATTAACC 3390 Query 184 AGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAG 243 ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 3391 AGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAAAG 3450 Query 244 AGCTATCAATCTGTC 258 |||| |||||||||| Sbjct 3451 AGCTCTCAATCTGTC 3465 Score = 253 bits (280), Expect = 3e-65 Identities = 212/255 (83%), Gaps = 11/255 (4%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 12432 TCCTTCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG 12491 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC-----CAGCCACCAA 126 ||||| | || | ||||| | ||||||||||||||| | | ||| | Sbjct 12492 -CTCAATC-TCGTGCGATTGGAAATCGCCTGTCCCTCTAAGAAGCTGATAAAACAACCGA 12549 Query 127 CCATAGTCGATGG---GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACC 183 | | | ||| | |||||||||||||| || ||||||||||||||||||||||||| Sbjct 12550 CGCT-GCGGATCGGTTGGCTATTTAGCAGGCTAGAGTCTCGTTCGTTATCGGAATTAACC 12608 Query 184 AGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAG 243 ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 12609 AGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAAAG 12668 Query 244 AGCTATCAATCTGTC 258 |||| |||||||||| Sbjct 12669 AGCTCTCAATCTGTC 12683 >seq17 Length=777369 Score = 253 bits (280), Expect = 3e-65 Identities = 212/255 (83%), Gaps = 11/255 (4%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 769993 TCCTTCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG 769934 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC-----CAGCCACCAA 126 ||||| | || | ||||| | ||||||||||||||| | | ||| | Sbjct 769933 -CTCAATC-TCGTGCGATTGGAAATCGCCTGTCCCTCTAAGAAGCTGATAAAACAACCGA 769876 Query 127 CCATAGTCGATGG---GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACC 183 | | | ||| | |||||||||||||| || ||||||||||||||||||||||||| Sbjct 769875 CGCT-GCGGATCGGTTGGCTATTTAGCAGGCTAGAGTCTCGTTCGTTATCGGAATTAACC 769817 Query 184 AGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAG 243 ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 769816 AGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAAAG 769757 Query 244 AGCTATCAATCTGTC 258 |||| |||||||||| Sbjct 769756 AGCTCTCAATCTGTC 769742 >seq173 Length=1097 Score = 183 bits (202), Expect = 5e-44 Identities = 112/119 (94%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 140 GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCAC 199 |||||||||||||| || |||||||||||||||||||||||||||||||||| |||||| Sbjct 1064 GGCTATTTAGCAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCAC 1005 Query 200 CAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 1004 CAACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTCTCAATCTGTC 946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796798456200