Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016-
11-09] 200 sequences; 55,842,812 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq30 360 3e-97
seq17 360 3e-97
seq186 212 1e-52
>seq30
Length=21282
Score = 360 bits (398), Expect = 3e-97
Identities = 257/294 (87%), Gaps = 1/294 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | |||||||||| | || ||||||||||||||||||||||||||||||
Sbjct 7667 TACTGAGCAGGATTACCATTGCAACAACCAGTCATCAGTAGGGTAAAACTAACCTGTCTC 7726
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||
Sbjct 7727 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGCGGGTGAACAATCCGACGCTTTGCG 7786
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
| |||| ||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 7787 ACGGCTGCATCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 7846
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 7847 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCT 7906
Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
| ||| | | | | |||||||||||||||||| |||||| ||| |||||||
Sbjct 7907 TAAAACTCTTAAAGTCAAAAGGATCGATAGGCCACGCTTTCACGGTCTGTATTC 7960
Score = 360 bits (398), Expect = 3e-97
Identities = 257/294 (87%), Gaps = 1/294 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | |||||||||| | || ||||||||||||||||||||||||||||||
Sbjct 16885 TACTGAGCAGGATTACCATTGCAACAACCAGTCATCAGTAGGGTAAAACTAACCTGTCTC 16944
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||
Sbjct 16945 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGCGGGTGAACAATCCGACGCTTTGCG 17004
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
| |||| ||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 17005 ACGGCTGCATCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 17064
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 17065 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCT 17124
Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
| ||| | | | | |||||||||||||||||| |||||| ||| |||||||
Sbjct 17125 TAAAACTCTTAAAGTCAAAAGGATCGATAGGCCACGCTTTCACGGTCTGTATTC 17178
>seq17
Length=777369
Score = 360 bits (398), Expect = 3e-97
Identities = 257/294 (87%), Gaps = 1/294 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | |||||||||| | || ||||||||||||||||||||||||||||||
Sbjct 765540 TACTGAGCAGGATTACCATTGCAACAACCAGTCATCAGTAGGGTAAAACTAACCTGTCTC 765481
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||
Sbjct 765480 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGCGGGTGAACAATCCGACGCTTTGCG 765421
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
| |||| ||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 765420 ACGGCTGCATCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 765361
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 765360 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCT 765301
Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
| ||| | | | | |||||||||||||||||| |||||| ||| |||||||
Sbjct 765300 TAAAACTCTTAAAGTCAAAAGGATCGATAGGCCACGCTTTCACGGTCTGTATTC 765247
Score = 360 bits (398), Expect = 3e-97
Identities = 257/294 (87%), Gaps = 1/294 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | |||||||||| | || ||||||||||||||||||||||||||||||
Sbjct 774759 TACTGAGCAGGATTACCATTGCAACAACCAGTCATCAGTAGGGTAAAACTAACCTGTCTC 774700
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||
Sbjct 774699 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGCGGGTGAACAATCCGACGCTTTGCG 774640
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
| |||| ||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 774639 ACGGCTGCATCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 774580
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 774579 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCT 774520
Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
| ||| | | | | |||||||||||||||||| |||||| ||| |||||||
Sbjct 774519 TAAAACTCTTAAAGTCAAAAGGATCGATAGGCCACGCTTTCACGGTCTGTATTC 774466
>seq186
Length=1365
Score = 212 bits (234), Expect = 1e-52
Identities = 149/169 (88%), Gaps = 1/169 (1%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | |||||||||| | || ||||||||||||||||||||||||||||||
Sbjct 1197 TACTGAGCAGGATTACCATTGCAACAACCAGTCATCAGTAGGGTAAAACTAACCTGTCTC 1256
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||
Sbjct 1257 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGCGGGTGAACAATCCGACGCTTTGCG 1316
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAG 168
| |||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1317 ACGGCTGCATCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAG 1365
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854398291200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |