Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq30 360 3e-97 seq17 360 3e-97 seq186 212 1e-52 >seq30 Length=21282 Score = 360 bits (398), Expect = 3e-97 Identities = 257/294 (87%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||||| | || |||||||||||||||||||||||||||||| Sbjct 7667 TACTGAGCAGGATTACCATTGCAACAACCAGTCATCAGTAGGGTAAAACTAACCTGTCTC 7726 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||||| ||||||||||||| |||||| || Sbjct 7727 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGCGGGTGAACAATCCGACGCTTTGCG 7786 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 | |||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 7787 ACGGCTGCATCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 7846 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 7847 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCT 7906 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | | |||||||||||||||||| |||||| ||| ||||||| Sbjct 7907 TAAAACTCTTAAAGTCAAAAGGATCGATAGGCCACGCTTTCACGGTCTGTATTC 7960 Score = 360 bits (398), Expect = 3e-97 Identities = 257/294 (87%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||||| | || |||||||||||||||||||||||||||||| Sbjct 16885 TACTGAGCAGGATTACCATTGCAACAACCAGTCATCAGTAGGGTAAAACTAACCTGTCTC 16944 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||||| ||||||||||||| |||||| || Sbjct 16945 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGCGGGTGAACAATCCGACGCTTTGCG 17004 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 | |||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 17005 ACGGCTGCATCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 17064 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 17065 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCT 17124 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | | |||||||||||||||||| |||||| ||| ||||||| Sbjct 17125 TAAAACTCTTAAAGTCAAAAGGATCGATAGGCCACGCTTTCACGGTCTGTATTC 17178 >seq17 Length=777369 Score = 360 bits (398), Expect = 3e-97 Identities = 257/294 (87%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||||| | || |||||||||||||||||||||||||||||| Sbjct 765540 TACTGAGCAGGATTACCATTGCAACAACCAGTCATCAGTAGGGTAAAACTAACCTGTCTC 765481 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||||| ||||||||||||| |||||| || Sbjct 765480 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGCGGGTGAACAATCCGACGCTTTGCG 765421 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 | |||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 765420 ACGGCTGCATCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 765361 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 765360 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCT 765301 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | | |||||||||||||||||| |||||| ||| ||||||| Sbjct 765300 TAAAACTCTTAAAGTCAAAAGGATCGATAGGCCACGCTTTCACGGTCTGTATTC 765247 Score = 360 bits (398), Expect = 3e-97 Identities = 257/294 (87%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||||| | || |||||||||||||||||||||||||||||| Sbjct 774759 TACTGAGCAGGATTACCATTGCAACAACCAGTCATCAGTAGGGTAAAACTAACCTGTCTC 774700 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||||| ||||||||||||| |||||| || Sbjct 774699 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGCGGGTGAACAATCCGACGCTTTGCG 774640 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 | |||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 774639 ACGGCTGCATCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 774580 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 774579 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCT 774520 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | | |||||||||||||||||| |||||| ||| ||||||| Sbjct 774519 TAAAACTCTTAAAGTCAAAAGGATCGATAGGCCACGCTTTCACGGTCTGTATTC 774466 >seq186 Length=1365 Score = 212 bits (234), Expect = 1e-52 Identities = 149/169 (88%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||||| | || |||||||||||||||||||||||||||||| Sbjct 1197 TACTGAGCAGGATTACCATTGCAACAACCAGTCATCAGTAGGGTAAAACTAACCTGTCTC 1256 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||||| ||||||||||||| |||||| || Sbjct 1257 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGCGGGTGAACAATCCGACGCTTTGCG 1316 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAG 168 | |||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 1317 ACGGCTGCATCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAG 1365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854398291200