Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq30 77.0 6e-12 seq17 77.0 6e-12 >seq30 Length=21282 Score = 77.0 bits (84), Expect = 6e-12 Identities = 92/124 (74%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||||| |||| ||||||||||||||||| | || |||| |||||| ||| | Sbjct 8100 GACAGTGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAACGGTAACGCAGGTG 8041 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 || ||| | |||||| ||| |||||| ||| | || || |||||||| || Sbjct 8040 TCCTAAGGCAAGCTCAGCGAGGACAGAAACCTCGCGTAGAGCAAAAGGGCAAAAGCTTGC 7981 Query 232 TTGA 235 |||| Sbjct 7980 TTGA 7977 Score = 77.0 bits (84), Expect = 6e-12 Identities = 92/124 (74%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||||| |||| ||||||||||||||||| | || |||| |||||| ||| | Sbjct 17318 GACAGTGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAACGGTAACGCAGGTG 17259 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 || ||| | |||||| ||| |||||| ||| | || || |||||||| || Sbjct 17258 TCCTAAGGCAAGCTCAGCGAGGACAGAAACCTCGCGTAGAGCAAAAGGGCAAAAGCTTGC 17199 Query 232 TTGA 235 |||| Sbjct 17198 TTGA 17195 >seq17 Length=777369 Score = 77.0 bits (84), Expect = 6e-12 Identities = 92/124 (74%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||||| |||| ||||||||||||||||| | || |||| |||||| ||| | Sbjct 765107 GACAGTGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAACGGTAACGCAGGTG 765166 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 || ||| | |||||| ||| |||||| ||| | || || |||||||| || Sbjct 765167 TCCTAAGGCAAGCTCAGCGAGGACAGAAACCTCGCGTAGAGCAAAAGGGCAAAAGCTTGC 765226 Query 232 TTGA 235 |||| Sbjct 765227 TTGA 765230 Score = 77.0 bits (84), Expect = 6e-12 Identities = 92/124 (74%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||||| |||| ||||||||||||||||| | || |||| |||||| ||| | Sbjct 774326 GACAGTGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAACGGTAACGCAGGTG 774385 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 || ||| | |||||| ||| |||||| ||| | || || |||||||| || Sbjct 774386 TCCTAAGGCAAGCTCAGCGAGGACAGAAACCTCGCGTAGAGCAAAAGGGCAAAAGCTTGC 774445 Query 232 TTGA 235 |||| Sbjct 774446 TTGA 774449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982398035200