Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq173 96.9 4e-18 seq30 96.9 4e-18 seq17 96.9 4e-18 >seq173 Length=1097 Score = 96.9 bits (106), Expect = 4e-18 Identities = 102/131 (78%), Gaps = 4/131 (3%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTC--GGG 67 ||||||||||||||| || | |||||||||||||||||||||| ||| | || Sbjct 553 AAACCAACAAAATAGAACCG-AGGTCCTATTCTATTATTCCATGCACCATTATGCAAGGC 495 Query 68 CGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACA 127 | || ||||||||||| |||||||||||| |||| ||||| || | ||| | ||||| Sbjct 494 CATACGCCTGCTTTGAGCACTCTAATTTTTTCAAAGTAAACGTTCCGGTCGCCAAGCACA 435 Query 128 -CCAATGAAGG 137 ||| |||||| Sbjct 434 CCCAGTGAAGG 424 >seq30 Length=21282 Score = 96.9 bits (106), Expect = 4e-18 Identities = 102/131 (78%), Gaps = 4/131 (3%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTC--GGG 67 ||||||||||||||| || | |||||||||||||||||||||| ||| | || Sbjct 3858 AAACCAACAAAATAGAACCG-AGGTCCTATTCTATTATTCCATGCACCATTATGCAAGGC 3916 Query 68 CGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACA 127 | || ||||||||||| |||||||||||| |||| ||||| || | ||| | ||||| Sbjct 3917 CATACGCCTGCTTTGAGCACTCTAATTTTTTCAAAGTAAACGTTCCGGTCGCCAAGCACA 3976 Query 128 -CCAATGAAGG 137 ||| |||||| Sbjct 3977 CCCAGTGAAGG 3987 Score = 96.9 bits (106), Expect = 4e-18 Identities = 102/131 (78%), Gaps = 4/131 (3%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTC--GGG 67 ||||||||||||||| || | |||||||||||||||||||||| ||| | || Sbjct 13076 AAACCAACAAAATAGAACCG-AGGTCCTATTCTATTATTCCATGCACCATTATGCAAGGC 13134 Query 68 CGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACA 127 | || ||||||||||| |||||||||||| |||| ||||| || | ||| | ||||| Sbjct 13135 CATACGCCTGCTTTGAGCACTCTAATTTTTTCAAAGTAAACGTTCCGGTCGCCAAGCACA 13194 Query 128 -CCAATGAAGG 137 ||| |||||| Sbjct 13195 CCCAGTGAAGG 13205 >seq17 Length=777369 Score = 96.9 bits (106), Expect = 4e-18 Identities = 102/131 (78%), Gaps = 4/131 (3%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTC--GGG 67 ||||||||||||||| || | |||||||||||||||||||||| ||| | || Sbjct 769349 AAACCAACAAAATAGAACCG-AGGTCCTATTCTATTATTCCATGCACCATTATGCAAGGC 769291 Query 68 CGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACA 127 | || ||||||||||| |||||||||||| |||| ||||| || | ||| | ||||| Sbjct 769290 CATACGCCTGCTTTGAGCACTCTAATTTTTTCAAAGTAAACGTTCCGGTCGCCAAGCACA 769231 Query 128 -CCAATGAAGG 137 ||| |||||| Sbjct 769230 CCCAGTGAAGG 769220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595198846800