Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq173 129 6e-28 seq30 129 6e-28 seq17 129 6e-28 >seq173 Length=1097 Score = 129 bits (142), Expect = 6e-28 Identities = 143/186 (77%), Gaps = 5/186 (3%) Strand=Plus/Plus Query 4 ACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTG--CTCGAATAC 61 ||| | || ||||||||||||||||||||| | ||||||||||| | || || | ||| Sbjct 446 ACCGGAACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCGTATGGCCTTGCATAA 505 Query 62 ATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC- 120 ||||||||||||||||||||| | |||||||||||||| ||||| | ||| | | Sbjct 506 TGGTGCATGGAATAATAGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAGCTCG 563 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||| |||| | | || |||||| | ||||| || | ||||||||||| Sbjct 564 AGGTAATGATTAATAGGAACAGACGGGGGCATTCGTATTGCGGCGTTAGAGGTGAAATTC 623 Query 181 TTGGAT 186 |||||| Sbjct 624 TTGGAT 629 >seq30 Length=21282 Score = 129 bits (142), Expect = 6e-28 Identities = 143/186 (77%), Gaps = 5/186 (3%) Strand=Plus/Minus Query 4 ACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTG--CTCGAATAC 61 ||| | || ||||||||||||||||||||| | ||||||||||| | || || | ||| Sbjct 3965 ACCGGAACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCGTATGGCCTTGCATAA 3906 Query 62 ATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC- 120 ||||||||||||||||||||| | |||||||||||||| ||||| | ||| | | Sbjct 3905 TGGTGCATGGAATAATAGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAGCTCG 3848 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||| |||| | | || |||||| | ||||| || | ||||||||||| Sbjct 3847 AGGTAATGATTAATAGGAACAGACGGGGGCATTCGTATTGCGGCGTTAGAGGTGAAATTC 3788 Query 181 TTGGAT 186 |||||| Sbjct 3787 TTGGAT 3782 Score = 129 bits (142), Expect = 6e-28 Identities = 143/186 (77%), Gaps = 5/186 (3%) Strand=Plus/Minus Query 4 ACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTG--CTCGAATAC 61 ||| | || ||||||||||||||||||||| | ||||||||||| | || || | ||| Sbjct 13183 ACCGGAACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCGTATGGCCTTGCATAA 13124 Query 62 ATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC- 120 ||||||||||||||||||||| | |||||||||||||| ||||| | ||| | | Sbjct 13123 TGGTGCATGGAATAATAGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAGCTCG 13066 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||| |||| | | || |||||| | ||||| || | ||||||||||| Sbjct 13065 AGGTAATGATTAATAGGAACAGACGGGGGCATTCGTATTGCGGCGTTAGAGGTGAAATTC 13006 Query 181 TTGGAT 186 |||||| Sbjct 13005 TTGGAT 13000 >seq17 Length=777369 Score = 129 bits (142), Expect = 6e-28 Identities = 143/186 (77%), Gaps = 5/186 (3%) Strand=Plus/Plus Query 4 ACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTG--CTCGAATAC 61 ||| | || ||||||||||||||||||||| | ||||||||||| | || || | ||| Sbjct 769242 ACCGGAACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCGTATGGCCTTGCATAA 769301 Query 62 ATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC- 120 ||||||||||||||||||||| | |||||||||||||| ||||| | ||| | | Sbjct 769302 TGGTGCATGGAATAATAGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAGCTCG 769359 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||| |||| | | || |||||| | ||||| || | ||||||||||| Sbjct 769360 AGGTAATGATTAATAGGAACAGACGGGGGCATTCGTATTGCGGCGTTAGAGGTGAAATTC 769419 Query 181 TTGGAT 186 |||||| Sbjct 769420 TTGGAT 769425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511999008000