Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq30 248 2e-63 seq17 248 2e-63 seq197 75.2 2e-11 >seq30 Length=21282 Score = 248 bits (274), Expect = 2e-63 Identities = 250/320 (78%), Gaps = 14/320 (4%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGC---CCGCTTTGGCGGGTCGC----CGGC 72 || |||||| || ||||||||||||||| | |||| | ||| | | || Sbjct 3374 GAACGAGACTCTAGCCTGCTAAATAGCCAACCGATCCGCAGCGTCGGTTGTTTTATCAGC 3315 Query 73 TTCTTAGAGGGACTATCGGCT--CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||||| || | ||| | | | || ||||| |||||||||||||||| Sbjct 3314 TTCTTAGAGGGACAGGCGATTTCCAATCGCACG--AGATTGAG-CAATAACAGGTCTGTG 3258 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAG--TTCAT 188 |||||||||||||| | ||||||||||||||||||||||| || ||||| | ||| Sbjct 3257 ATGCCCTTAGATGTCCGGGGCCGCACGCGCGCTACACTGAAGGAATCAACGTGCTTTCTC 3198 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 ||||||||||||||| ||||| |||| | |||||| ||||| | ||||| |||| | Sbjct 3197 TACCTTGGCCGGAAGGCCTGGGGAATCCGATGAAACTCCTTCGTGATTGGGATTGAGCTT 3138 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 || |||||| |||| | |||||||||| || |||||||||| ||||| ||| |||||||| Sbjct 3137 TGTAATTATCGCTCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGA 3078 Query 309 TTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||| Sbjct 3077 TTACGTCCCTGCCCTTTGTA 3058 Score = 248 bits (274), Expect = 2e-63 Identities = 250/320 (78%), Gaps = 14/320 (4%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGC---CCGCTTTGGCGGGTCGC----CGGC 72 || |||||| || ||||||||||||||| | |||| | ||| | | || Sbjct 12592 GAACGAGACTCTAGCCTGCTAAATAGCCAACCGATCCGCAGCGTCGGTTGTTTTATCAGC 12533 Query 73 TTCTTAGAGGGACTATCGGCT--CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||||| || | ||| | | | || ||||| |||||||||||||||| Sbjct 12532 TTCTTAGAGGGACAGGCGATTTCCAATCGCACG--AGATTGAG-CAATAACAGGTCTGTG 12476 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAG--TTCAT 188 |||||||||||||| | ||||||||||||||||||||||| || ||||| | ||| Sbjct 12475 ATGCCCTTAGATGTCCGGGGCCGCACGCGCGCTACACTGAAGGAATCAACGTGCTTTCTC 12416 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 ||||||||||||||| ||||| |||| | |||||| ||||| | ||||| |||| | Sbjct 12415 TACCTTGGCCGGAAGGCCTGGGGAATCCGATGAAACTCCTTCGTGATTGGGATTGAGCTT 12356 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 || |||||| |||| | |||||||||| || |||||||||| ||||| ||| |||||||| Sbjct 12355 TGTAATTATCGCTCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGA 12296 Query 309 TTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||| Sbjct 12295 TTACGTCCCTGCCCTTTGTA 12276 >seq17 Length=777369 Score = 248 bits (274), Expect = 2e-63 Identities = 250/320 (78%), Gaps = 14/320 (4%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGC---CCGCTTTGGCGGGTCGC----CGGC 72 || |||||| || ||||||||||||||| | |||| | ||| | | || Sbjct 769833 GAACGAGACTCTAGCCTGCTAAATAGCCAACCGATCCGCAGCGTCGGTTGTTTTATCAGC 769892 Query 73 TTCTTAGAGGGACTATCGGCT--CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||||| || | ||| | | | || ||||| |||||||||||||||| Sbjct 769893 TTCTTAGAGGGACAGGCGATTTCCAATCGCACG--AGATTGAG-CAATAACAGGTCTGTG 769949 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAG--TTCAT 188 |||||||||||||| | ||||||||||||||||||||||| || ||||| | ||| Sbjct 769950 ATGCCCTTAGATGTCCGGGGCCGCACGCGCGCTACACTGAAGGAATCAACGTGCTTTCTC 770009 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 ||||||||||||||| ||||| |||| | |||||| ||||| | ||||| |||| | Sbjct 770010 TACCTTGGCCGGAAGGCCTGGGGAATCCGATGAAACTCCTTCGTGATTGGGATTGAGCTT 770069 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 || |||||| |||| | |||||||||| || |||||||||| ||||| ||| |||||||| Sbjct 770070 TGTAATTATCGCTCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGA 770129 Query 309 TTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||| Sbjct 770130 TTACGTCCCTGCCCTTTGTA 770149 >seq197 Length=1033 Score = 75.2 bits (82), Expect = 2e-11 Identities = 46/49 (94%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 280 AGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||||||||| ||||| ||| |||||||||||||||||||||||||||| Sbjct 1032 AGTAAGCGCGAGTCATAAGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947198105600