Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq30 616 5e-174 seq17 616 5e-174 seq186 517 4e-144 seq7 84.2 7e-14 >seq30 Length=21282 Score = 616 bits (682), Expect = 5e-174 Identities = 468/548 (85%), Gaps = 21/548 (4%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| ||||||| ||| |||| ||||||||||||||||||| Sbjct 7994 CTTTTGCTCTACGCGAGGTTTCTGTCCTCGCTGAGCTTGCCTTAGGACACCTGCGTTACC 8053 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||||||| ||||||||| |||||||||| ||||||| |||||||| |||||| Sbjct 8054 GTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACACTGTCATCAGAACGGATC 8113 Query 127 GGCCCG-CGA---AG---GACC-----TTAACGCCAGAA--AATGGTCGGTGAAGACCAG 172 | | | ||| || |||| |||| ||||||| || | ||| | | ||||| Sbjct 8114 GCGCAGTCGAGTAAGATCGACCAGCGCTTAATGCCAGAATTAAAGCCCGGAGTAAACCAG 8173 Query 173 T------TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGC 226 ||||||| | ||| | |||||| ||||||| | |||||||||||||||| | Sbjct 8174 GCCAAACTCCGCTTTACTGAATTAGTAAAGAAACGATGAAAGTAGTGGTATTTCACTGTC 8233 Query 227 GCCGAAACGGC-TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGA 285 | | | || ||||||||||||||||||||||| ||| |||| ||| ||||||| Sbjct 8234 GGCATTGCTGCCTCCCACTTATTCTACACCTCTCATGTCTCCTCACCGTGTCAGACTAGA 8293 Query 286 GTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGT 345 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 8294 GTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGT 8353 Query 346 GGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405 |||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||| Sbjct 8354 GGTTTCGCTAGACAGTAGATAGGGACAGTGGGAGTCTCGTTGATCCATTCATGCGCGTCA 8413 Query 406 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 465 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8414 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 8473 Query 466 CCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTG 525 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8474 CCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTG 8533 Query 526 CGTCAACA 533 |||||||| Sbjct 8534 CGTCAACA 8541 Score = 443 bits (490), Expect = 7e-122 Identities = 372/452 (82%), Gaps = 21/452 (5%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| ||||||| ||| |||| ||||||||||||||||||| Sbjct 17212 CTTTTGCTCTACGCGAGGTTTCTGTCCTCGCTGAGCTTGCCTTAGGACACCTGCGTTACC 17271 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||||||| ||||||||| |||||||||| ||||||| |||||||| |||||| Sbjct 17272 GTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACACTGTCATCAGAACGGATC 17331 Query 127 GGCCCG-CGA---AG---GACC-----TTAACGCCAGAA--AATGGTCGGTGAAGACCAG 172 | | | ||| || |||| |||| ||||||| || | ||| | | ||||| Sbjct 17332 GCGCAGTCGAGTAAGATCGACCAGCGCTTAATGCCAGAATTAAAGCCCGGAGTAAACCAG 17391 Query 173 T------TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGC 226 ||||||| | ||| | |||||| ||||||| | |||||||||||||||| | Sbjct 17392 GCCAAACTCCGCTTTACTGAATTAGTAAAGAAACGATGAAAGTAGTGGTATTTCACTGTC 17451 Query 227 GCCGAAACGGC-TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGA 285 | | | || ||||||||||||||||||||||| ||| |||| ||| ||||||| Sbjct 17452 GGCATTGCTGCCTCCCACTTATTCTACACCTCTCATGTCTCCTCACCGTGTCAGACTAGA 17511 Query 286 GTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGT 345 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 17512 GTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGT 17571 Query 346 GGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405 |||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||| Sbjct 17572 GGTTTCGCTAGACAGTAGATAGGGACAGTGGGAGTCTCGTTGATCCATTCATGCGCGTCA 17631 Query 406 CTAATTAGATGACGAGGCATTTGGCTACCTTA 437 |||||||||||||||||||||||||||||||| Sbjct 17632 CTAATTAGATGACGAGGCATTTGGCTACCTTA 17663 >seq17 Length=777369 Score = 616 bits (682), Expect = 5e-174 Identities = 468/548 (85%), Gaps = 21/548 (4%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| ||||||| ||| |||| ||||||||||||||||||| Sbjct 774432 CTTTTGCTCTACGCGAGGTTTCTGTCCTCGCTGAGCTTGCCTTAGGACACCTGCGTTACC 774373 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||||||| ||||||||| |||||||||| ||||||| |||||||| |||||| Sbjct 774372 GTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACACTGTCATCAGAACGGATC 774313 Query 127 GGCCCG-CGA---AG---GACC-----TTAACGCCAGAA--AATGGTCGGTGAAGACCAG 172 | | | ||| || |||| |||| ||||||| || | ||| | | ||||| Sbjct 774312 GCGCAGTCGAGTAAGATCGACCAGCGCTTAATGCCAGAATTAAAGCCCGGAGTAAACCAG 774253 Query 173 T------TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGC 226 ||||||| | ||| | |||||| ||||||| | |||||||||||||||| | Sbjct 774252 GCCAAACTCCGCTTTACTGAATTAGTAAAGAAACGATGAAAGTAGTGGTATTTCACTGTC 774193 Query 227 GCCGAAACGGC-TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGA 285 | | | || ||||||||||||||||||||||| ||| |||| ||| ||||||| Sbjct 774192 GGCATTGCTGCCTCCCACTTATTCTACACCTCTCATGTCTCCTCACCGTGTCAGACTAGA 774133 Query 286 GTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGT 345 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 774132 GTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGT 774073 Query 346 GGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405 |||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||| Sbjct 774072 GGTTTCGCTAGACAGTAGATAGGGACAGTGGGAGTCTCGTTGATCCATTCATGCGCGTCA 774013 Query 406 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 465 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 774012 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 773953 Query 466 CCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTG 525 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 773952 CCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTG 773893 Query 526 CGTCAACA 533 |||||||| Sbjct 773892 CGTCAACA 773885 Score = 435 bits (482), Expect = 1e-119 Identities = 372/453 (82%), Gaps = 22/453 (5%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| ||||||| ||| |||| ||||||||||||||||||| Sbjct 765213 CTTTTGCTCTACGCGAGGTTTCTGTCCTCGCTGAGCTTGCCTTAGGACACCTGCGTTACC 765154 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||||||| ||||||||| |||||||||| ||||||| |||||||| |||||| Sbjct 765153 GTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACACTGTCATCAGAACGGATC 765094 Query 127 GGCCCG-CGA---AG---GACC-----TTAACGCCAGAA--AATGGTCGGTGAAGACCAG 172 | | | ||| || |||| |||| ||||||| || | ||| | | ||||| Sbjct 765093 GCGCAGTCGAGTAAGATCGACCAGCGCTTAATGCCAGAATTAAAGCCCGGAGTAAACCAG 765034 Query 173 T------TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGC 226 ||||||| | ||| | |||||| ||||||| | |||||||||||||||| | Sbjct 765033 GCCAAACTCCGCTTTACTGAATTAGTAAAGAAACGATGAAAGTAGTGGTATTTCACTGTC 764974 Query 227 GCCGAAACGGC-TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGA 285 | | | || ||||||||||||||||||||||| ||| |||| ||| ||||||| Sbjct 764973 GGCATTGCTGCCTCCCACTTATTCTACACCTCTCATGTCTCCTCACCGTGTCAGACTAGA 764914 Query 286 GTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGT 345 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 764913 GTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGT 764854 Query 346 GGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405 |||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||| Sbjct 764853 GGTTTCGCTAGACAGTAGATAGGGACAGTGGGAGTCTCGTTGATCCATTCATGCGCGTCA 764794 Query 406 CTAATTAGATGACGAGGCATTT-GGCTACCTTA 437 |||||||||||||||||||||| |||||||||| Sbjct 764793 CTAATTAGATGACGAGGCATTTGGGCTACCTTA 764761 >seq186 Length=1365 Score = 517 bits (572), Expect = 4e-144 Identities = 332/361 (92%), Gaps = 1/361 (0%) Strand=Plus/Plus Query 174 TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA 233 ||||||| | ||| | |||||| ||||||| | |||||||||||||||| || | Sbjct 24 TCCGCTTTACTGAATTAGTAAAGAAACGATGAAAGTAGTGGTATTTCACTGTCGGCATTG 83 Query 234 CGGC-TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGC 292 | || ||||||||||||||||||||||| ||| |||| ||| |||||||||||||| Sbjct 84 CTGCCTCCCACTTATTCTACACCTCTCATGTCTCCTCACCGTGTCAGACTAGAGTCAAGC 143 Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 144 TCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 203 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 ||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 204 CTAGACAGTAGATAGGGACAGTGGGAGTCTCGTTGATCCATTCATGCGCGTCACTAATTA 263 Query 413 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 264 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 323 Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 324 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 383 Query 533 A 533 | Sbjct 384 A 384 >seq7 Length=2342111 Score = 84.2 bits (92), Expect = 7e-14 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 466 CCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTG 525 ||| || ||| ||| ||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 613472 CCCACGAGTGGATGACTTTCTTCGCTTTGACATTCAGAGCACTGGGCAGAAATTACATGG 613531 Query 526 CGTCAACATCA 536 ||| |||| || Sbjct 613532 CGTTAACACCA 613542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635196729600