Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq30 405 2e-110 seq17 405 2e-110 seq173 210 7e-52 >seq30 Length=21282 Score = 405 bits (448), Expect = 2e-110 Identities = 406/514 (79%), Gaps = 16/514 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCT-GTATCAGTATTTATTGTCACTACC 59 |||| |||||| ||||| | | | ||| ||| || | ||| ||||| | ||||||||| Sbjct 4185 GTACCCATTCCGATTACGAAAAGCTAAA-AGCTCTCGCATCGTTATTTTTCGTCACTACC 4243 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4244 TCCCCGTGCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 4303 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||||||||||||||||| ||| |||| | ||||||||||||| || || |||| Sbjct 4304 TTCTCAGGCTCCCTCTCCGGTGTCGGGCCCTGACACCCCGTTACCCGTCGAAGCCTTGGT 4363 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| || ||||||| | ||| ||||| | |||| | ||||| || | |||||| Sbjct 4364 AGGCACATAACCTACCAAC--AAGCTGATAAGTCAGACACTTGAAAGATCTGGCGCCGGT 4421 Query 240 TCAAGGCCATGCGATTCG-TTAAGTTATTATGAATCACCAA----GGAGCCCCGAAGGGC 294 | || ||||||| | || || |||||| || ||||||| | |||||||| | Sbjct 4422 ACGAGACCATGCGCTCCGCTTCGGTTATTCAGAGTCACCAATTTTACCGACCCGAAGGCC 4481 Query 295 G--TTGGTTTTTTATCTAATAAATACAC-CCCTTCCG-AAGTCGGGGTTTTTAGCATGTA 350 | |||||||| | |||||||| | | | | || ||| ||| | | | ||||||| Sbjct 4482 GGATTGGTTTTAT-TCTAATAACTGCGCTCGCTCCCGAAAGAGCGAGCTGAATGCATGTA 4540 Query 351 TTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACT 410 ||||||||||||||||||| |||||||||||| | |||| ||| | | ||| |||||| Sbjct 4541 TTAGCTCTAGAATTACCACAGTTATCCATGTA-AACTGTACGATCTAGTGAACCATAACT 4599 Query 411 GATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGC 470 ||||||||||||||||||| ||||| | | || | || |||| ||||||||||||| Sbjct 4600 GATTTAATGAGCCATTCGCGGTTTCGCCTTGTA-AAAGCAAGTACTGAGACATGCATGGC 4658 Query 471 TTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||| Sbjct 4659 TTAATCTTTGAGACAAGCATATGACTACTGGCAG 4692 Score = 405 bits (448), Expect = 2e-110 Identities = 406/514 (79%), Gaps = 16/514 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCT-GTATCAGTATTTATTGTCACTACC 59 |||| |||||| ||||| | | | ||| ||| || | ||| ||||| | ||||||||| Sbjct 13403 GTACCCATTCCGATTACGAAAAGCTAAA-AGCTCTCGCATCGTTATTTTTCGTCACTACC 13461 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 13462 TCCCCGTGCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 13521 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||||||||||||||||| ||| |||| | ||||||||||||| || || |||| Sbjct 13522 TTCTCAGGCTCCCTCTCCGGTGTCGGGCCCTGACACCCCGTTACCCGTCGAAGCCTTGGT 13581 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| || ||||||| | ||| ||||| | |||| | ||||| || | |||||| Sbjct 13582 AGGCACATAACCTACCAAC--AAGCTGATAAGTCAGACACTTGAAAGATCTGGCGCCGGT 13639 Query 240 TCAAGGCCATGCGATTCG-TTAAGTTATTATGAATCACCAA----GGAGCCCCGAAGGGC 294 | || ||||||| | || || |||||| || ||||||| | |||||||| | Sbjct 13640 ACGAGACCATGCGCTCCGCTTCGGTTATTCAGAGTCACCAATTTTACCGACCCGAAGGCC 13699 Query 295 G--TTGGTTTTTTATCTAATAAATACAC-CCCTTCCG-AAGTCGGGGTTTTTAGCATGTA 350 | |||||||| | |||||||| | | | | || ||| ||| | | | ||||||| Sbjct 13700 GGATTGGTTTTAT-TCTAATAACTGCGCTCGCTCCCGAAAGAGCGAGCTGAATGCATGTA 13758 Query 351 TTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACT 410 ||||||||||||||||||| |||||||||||| | |||| ||| | | ||| |||||| Sbjct 13759 TTAGCTCTAGAATTACCACAGTTATCCATGTA-AACTGTACGATCTAGTGAACCATAACT 13817 Query 411 GATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGC 470 ||||||||||||||||||| ||||| | | || | || |||| ||||||||||||| Sbjct 13818 GATTTAATGAGCCATTCGCGGTTTCGCCTTGTA-AAAGCAAGTACTGAGACATGCATGGC 13876 Query 471 TTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||| Sbjct 13877 TTAATCTTTGAGACAAGCATATGACTACTGGCAG 13910 >seq17 Length=777369 Score = 405 bits (448), Expect = 2e-110 Identities = 406/514 (79%), Gaps = 16/514 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCT-GTATCAGTATTTATTGTCACTACC 59 |||| |||||| ||||| | | | ||| ||| || | ||| ||||| | ||||||||| Sbjct 769022 GTACCCATTCCGATTACGAAAAGCTAAA-AGCTCTCGCATCGTTATTTTTCGTCACTACC 768964 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 768963 TCCCCGTGCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 768904 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||||||||||||||||| ||| |||| | ||||||||||||| || || |||| Sbjct 768903 TTCTCAGGCTCCCTCTCCGGTGTCGGGCCCTGACACCCCGTTACCCGTCGAAGCCTTGGT 768844 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| || ||||||| | ||| ||||| | |||| | ||||| || | |||||| Sbjct 768843 AGGCACATAACCTACCAAC--AAGCTGATAAGTCAGACACTTGAAAGATCTGGCGCCGGT 768786 Query 240 TCAAGGCCATGCGATTCG-TTAAGTTATTATGAATCACCAA----GGAGCCCCGAAGGGC 294 | || ||||||| | || || |||||| || ||||||| | |||||||| | Sbjct 768785 ACGAGACCATGCGCTCCGCTTCGGTTATTCAGAGTCACCAATTTTACCGACCCGAAGGCC 768726 Query 295 G--TTGGTTTTTTATCTAATAAATACAC-CCCTTCCG-AAGTCGGGGTTTTTAGCATGTA 350 | |||||||| | |||||||| | | | | || ||| ||| | | | ||||||| Sbjct 768725 GGATTGGTTTTAT-TCTAATAACTGCGCTCGCTCCCGAAAGAGCGAGCTGAATGCATGTA 768667 Query 351 TTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACT 410 ||||||||||||||||||| |||||||||||| | |||| ||| | | ||| |||||| Sbjct 768666 TTAGCTCTAGAATTACCACAGTTATCCATGTA-AACTGTACGATCTAGTGAACCATAACT 768608 Query 411 GATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGC 470 ||||||||||||||||||| ||||| | | || | || |||| ||||||||||||| Sbjct 768607 GATTTAATGAGCCATTCGCGGTTTCGCCTTGTA-AAAGCAAGTACTGAGACATGCATGGC 768549 Query 471 TTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||| Sbjct 768548 TTAATCTTTGAGACAAGCATATGACTACTGGCAG 768515 >seq173 Length=1097 Score = 210 bits (232), Expect = 7e-52 Identities = 179/217 (82%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCT-GTATCAGTATTTATTGTCACTACC 59 |||| |||||| ||||| | | | ||| ||| || | ||| ||||| | ||||||||| Sbjct 226 GTACCCATTCCGATTACGAAAAGCTAAA-AGCTCTCGCATCGTTATTTTTCGTCACTACC 168 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 167 TCCCCGTGCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 108 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||||||||||||||||| ||| |||| | ||||||||||||| || || |||| Sbjct 107 TTCTCAGGCTCCCTCTCCGGTGTCGGGCCCTGACACCCCGTTACCCGTCGAAGCCTTGGT 48 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216 |||| || ||||||| | ||| ||||| | |||| Sbjct 47 AGGCACATAACCTACCAAC--AAGCTGATAAGTCAGA 13 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510396979200