Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq14 159 3e-34 seq2 109 4e-19 seq18 89.7 4e-13 >seq14 Length=1536585 Score = 159 bits (176), Expect = 3e-34 Identities = 212/288 (74%), Gaps = 6/288 (2%) Strand=Plus/Minus Query 61088 TTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGT 61147 ||| || |||||||| || || || ||||||||||| ||||| || || || || Sbjct 516115 TTTTGCAGATGTACAAGAAAGCAACGGCCTCCTTCTGGACCGTGGAAGAAGTAGACCTGG 516056 Query 61148 CCAAAGACATGAATGACTGGGA--GCGTTTATCGAGCGGTGAACAACATTTCATTAA-AC 61204 ||||||||||| | |||||| | || | || || || ||||| | ||| | | || Sbjct 516055 CCAAAGACATGGAAGACTGGAACAGCCTGAAT-GA-CGAAGAACAGCTCTTCGTCAGTAC 515998 Query 61205 ATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTT 61264 | | |||| ||||| |||||| ||||| |||||||| || || ||| || || | Sbjct 515997 AA-TCCTGGCCTTCTTCGCCGCTAGCGACGGCATCGTCAACGAAAACTTAACCGAGCGGT 515939 Query 61265 TCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGG 61324 || |||| || || || | | || || || | ||||||||||||||||| ||||||| Sbjct 515938 TCTCGCAAGAAGTCCAGATACCTGAAGCCCGCTCATTCTACGGCTTCCAGATCGCCATGG 515879 Query 61325 AGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 |||||||||| ||||| |||||||| | || ||||| |||||||||| Sbjct 515878 AGAATGTCCATTCGGAAATGTACAGCTTGCTGATCGACACGTACATCA 515831 Score = 116 bits (128), Expect = 3e-21 Identities = 161/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 61397 TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGC-CTTCAAT 61455 ||||||| || | || || || ||| |||||| ||||||||||||||| |||| | Sbjct 515749 TGTTCAACGCAGTTGAAACCATGCCGAGTGTGAAGAAGAAAGCGGATTGGGCGCTTCGGT 515690 Query 61456 TGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAG 61515 ||||| | | || || | ||||| |||||| | | || || || | ||| ||| Sbjct 515689 -GGATCTCGAATAGTGAAGCATCTTTTGGCGAACGAGTCGTCGCGTTCGCCGCGGTTGAG 515631 Query 61516 GGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATG 61575 || | ||||||||||| || || || || || || ||| | |||||||| || || ||| Sbjct 515630 GGCATCTTTTTCAGTGGGTCCTTCGCGGCCATATTCTGGCTCAAGAAACGAGGGCTCATG 515571 Query 61576 CCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGG 61618 || || |||||| |||||| || ||||| |||||||||| Sbjct 515570 CCAGGCTTGACCTACAGCAACGAACTGATAAGTCGCGACGAGG 515528 >seq2 Length=9028361 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 66254 TCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGAC 66313 ||||| ||| ||||| || || ||||| | || | | |||||| ||||||| || Sbjct 7431671 TCGAACTCTTCGCCCCAAACGTCCGACAGTCCGGGGCTTTCGTGTGGGCACATCAAACAC 7431730 Query 66314 CAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAG 66373 || || || | || | || |||||||| || || || || ||||| | ||| ||| Sbjct 7431731 CAGTCGCCGTTCTCCTGGACGCGACGCATGAAGAGGTCGGGGATCCACAAGGCCAGAAAG 7431790 Query 66374 AGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAG 66433 ||||| || |||||||||||||| ||| || || |||| || || || || ||| Sbjct 7431791 AGATCTCGGGCTCGTTGCTCCTCGGACCCGGTGTTCTTCCGCAGTTCCAGAAAGTCGAAG 7431850 Query 66434 ATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAA 66468 | ||||| ||||| || |||| |||||| ||||| Sbjct 7431851 ACATCGGCGTGCCACGGCTCCAAGTAGATAGCGAA 7431885 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 66034 TATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGT 66093 || ||| || |||| | | |||||||| || || ||||||||||| ||| ||||| Sbjct 7431387 TACCTCTTCTGGAGAGCTGTACTCGACGATCTCCGTGCACAGATTCGAGCACTTGATGGT 7431446 Query 66094 GCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGT 66153 ||||| || || || || ||||| || ||||| |||||||| | ||| | ||| | Sbjct 7431447 ACCCAAGTTTTGCTGGTTGCTCTTTCGGTTGCAGTGGTCCTTGTAAACGATGAAAGGACT 7431506 Query 66154 GCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAG 66192 ||||| || | || | || | |||||||||||| || Sbjct 7431507 TCCGGTTTCTGCCTGAGCGTCCAGGATGGCGTGCCACAG 7431545 >seq18 Length=652692 Score = 89.7 bits (98), Expect = 4e-13 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 61397 TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATT 61456 |||| || || | |||||||| ||| | ||| | ||| || || ||||| | | || Sbjct 264135 TGTTTAACGCTGTGGAGACGATGCCGTCTGTGCGGAAGAAGGCTGACTGGGCGCTGAGTT 264076 Query 61457 GGATCACCA-GTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAG 61515 |||||| | || ||||| | || | || ||||| | | || || || |||||| Sbjct 264075 GGATCAACTCGTCCAACGCC-ACCTACGGCGAACGCGTCGTCGCCTTCGCTTCCGTCGAG 264017 Query 61516 GGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATG 61575 || | || |||||||| || || ||| | ||||| ||| | ||||| ||| | ||| Sbjct 264016 GGCATCTTCTTCAGTGGCTCCTTCGCCTCCATCTTCTGGCTCCGTAAACGAGGAATAATG 263957 Query 61576 CCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGG 61618 || ||||| ||||||||||| || | || |||||||||| Sbjct 263956 CCTGGTCTCACCTTCAGCAACGAACTCATCAGTCGCGACGAGG 263914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567030928000