Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramazzottius_20varieornatus_20[genbank_20GCA_5F001949185.1_202016- 11-09] 200 sequences; 55,842,812 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq3 107 3e-18 >seq3 Length=5402078 Score = 107 bits (118), Expect = 3e-18 Identities = 134/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 162455 TCTACCAAGCGAGCACCAGTGAGCTTTATGGGCTAGTTCAGGAGACACCCCAGAAAGAAA 162514 |||||||||| ||||||||||||||| || || ||||||| || ||||| |||| Sbjct 1087840 TCTACCAAGCTTCCACCAGTGAGCTTTACGGCAAGGTCCAGGAGATCCCTCAGAAGGAAA 1087899 Query 162515 CCACTCCAATGTATCCACGATCCCCTTATGGAGTTGCTAAACTATATGGGTTCTGGATCA 162574 |||| || | || || ||||| || ||||| || || || || |||| | ||||||| Sbjct 1087900 CCACCCCGTTCTACCCGCGATCACCGTATGGCGTAGCCAAGCTGTATGCCTACTGGATCG 1087959 Query 162575 TCAAAAACTACAGGGAAAGCTATGACATACATGCCTCTAGCGGTATTCTATTCAATCACG 162634 ||| |||| |||||| || |||| |||| | | || || || ||||| |||| Sbjct 1087960 TCATCAACTTTAGGGAAGCGTACAACATGTATGCTTGCAATGGCATACTTTTCAACCACG 1088019 Query 162635 AAAG 162638 |||| Sbjct 1088020 AAAG 1088023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691457471352000