Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq6160 232 2e-58 seq119817 77.0 8e-12 seq62426 77.0 8e-12 seq6894 77.0 8e-12 >seq6160 Length=10982 Score = 232 bits (256), Expect = 2e-58 Identities = 253/335 (76%), Gaps = 1/335 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||||||| | |||| |||||||||| |||||||||||||||||||||| |||| || Sbjct 5763 TACCTGATCAGAAAGCCACGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGTGGC 5822 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||| ||| ||||||||||||||||| || |||| ||||| | || Sbjct 5823 AAGCGTTATCCGGATTTATTGGGCGTAAAGCGTGCGTAGACGGTATAGTAAGTTTGAGGT 5882 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||| | ||||| |||| | | ||| || ||| |||||| || ||| Sbjct 5883 TAAAGTCTGGGGCTCAACCCCAGTA-TGCCTTGAAAACTATTAAACTAGAATGCAGGAGA 5941 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || |||||||||| |||||| ||| ||||||||||||| ||||||||||||| || Sbjct 5942 GGTTAATGGAATTCCATATGTAGCGGTGGAATGCGTAGATATATGGAGGAACACCAGGGG 6001 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 ||||||| | | | | | ||||| | |||||||||||||||||||||| || Sbjct 6002 CGAAGGCGGTTAACCAGCCTGTTATTGACGTTTCAGCACGAAAGCGTGGGGAGCAAATAG 6061 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||| ||||||||||| |||||||| Sbjct 6062 GATTAGATACCCTAGTAGTCCACGCTGTAAACGAT 6096 >seq119817 Length=128 Score = 77.0 bits (84), Expect = 8e-12 Identities = 50/55 (91%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 280 ACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAAC 334 |||||||| ||| |||||||||||||||||||||||||||||| ||| |||||| Sbjct 125 ACGAAAGCTTGGATAGCAAACAGGATTAGATACCCTGGTAGTCCTCGCTCTAAAC 71 >seq62426 Length=131 Score = 77.0 bits (84), Expect = 8e-12 Identities = 50/55 (91%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 280 ACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAAC 334 |||||||| ||| |||||||||||||||||||||||||||||| ||| |||||| Sbjct 123 ACGAAAGCTTGGATAGCAAACAGGATTAGATACCCTGGTAGTCCTCGCTCTAAAC 69 >seq6894 Length=130 Score = 77.0 bits (84), Expect = 8e-12 Identities = 50/55 (91%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 280 ACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAAC 334 |||||||| ||| |||||||||||||||||||||||||||||| ||| |||||| Sbjct 128 ACGAAAGCTTGGATAGCAAACAGGATTAGATACCCTGGTAGTCCTCGCTCTAAAC 74 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1287394100512