Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq6160 244 2e-62 >seq6160 Length=10982 Score = 244 bits (270), Expect = 2e-62 Identities = 229/290 (79%), Gaps = 1/290 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| || | ||||| | || | | | | ||||||||||| ||||||| Sbjct 6051 CCCACGCTTTCGTGCTGAAACGTCAATAACAGGCTGGTTAACCGCCTTCGCCCCTGGTGT 5992 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| |||||||||||||| |||||||||| | |||||||| | ||||||| ||| Sbjct 5991 TCCTCCATATATCTACGCATTCCACCGCTACATATGGAATTCCATTAACCTCTCCTGCAT 5932 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || || || ||||| || ||| || ||||||||||| ||| || || ||| Sbjct 5931 TCTAGTTTAATAGTTTTCAAGGCATACTG-GGGTTGAGCCCCAGACTTTAACCTCAAACT 5873 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | | ||| |||| | | |||||| ||||||||||||||||||||||||||||||| | Sbjct 5872 TACTATACCGTCTACGCACGCTTTACGCCCAATAAATCCGGATAACGCTTGCCACCTATG 5813 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||||||||||||||||| |||||||||||||||| | ||||||| Sbjct 5812 TATTACCGCGGCTGCTGGCACATAGTTAGCCGTGGCTTTCTGATCAGGTA 5763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 827426615463