Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq6160 313 7e-83 >seq6160 Length=10982 Score = 313 bits (346), Expect = 7e-83 Identities = 383/525 (73%), Gaps = 41/525 (8%) Strand=Plus/Plus Query 12 CTTCGGAGAAGAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGG 71 |||||| | || |||| ||||||||||||| ||| ||| |||||| | | || Sbjct 5355 CTTCGGTGTTTAGTGGCGAACGGGTGAGTAACACGTATTTAATCTGCCCATCAGAGGGGG 5414 Query 72 ATAACATACCGAAAGGTATGCTAATACGAGATAATAT--ACTTTTATCGCATGGTAGA-- 127 |||||| | |||| | ||||||||| ||||||| | | | || ||| || | Sbjct 5415 ATAACAACCGGAAACGGTTGCTAATACCGCATAATATGTATTGTGATAACATAATACATT 5474 Query 128 ---AG----TATCAAA-GCTCCGGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTG 179 || | | ||| || || ||| | || | | |||| |||||||||||| Sbjct 5475 GAAAGGTGCTGTAAAATGCACCACTGGTGGATGAGAATGCGGCGT---ATTAGCTAGTTG 5531 Query 180 GTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCAC 239 || ||||| || ||||||||| ||| ||||||||||||||||||||| ||||||| Sbjct 5532 GTGGGGTAATAGCCTACCAAGGCTTTGATACGTAGCCGACCTGAGAGGGTGAACGGCCAC 5591 Query 240 ATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAA 299 || || |||||||||||| || ||||||||||||||||||||| |||||| || ||||| Sbjct 5592 ATCGGGACTGAGACACGGCCCGGACTCCTACGGGAGGCAGCAGTAGGGAATTTTCCACAA 5651 Query 300 TGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGC 359 ||| | |||| |||||| ||||| ||||||||| ||||| |||||| |||| ||||| Sbjct 5652 TGGACGAAAGTCTGATGGAGCAATGCCGCGTGATTGATGACGGCCTTAGGGTTGTAAAAA 5711 Query 360 TCTGTCCTCAAGGAAGA-------------------------TAATGACGGTACTTGAGG 394 ||||| | | |||||| |||||||||||| ||| Sbjct 5712 TCTGTTATTAGGGAAGAAACCACTGTATAGGAAATGATACAGTAATGACGGTACCTGATC 5771 Query 395 AGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTAT 454 || ||||| |||||||||| |||||||||||||||||||||| |||| ||| |||||||| Sbjct 5772 AGAAAGCCACGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGTGGCAAGCGTTAT 5831 Query 455 CCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 ||||| ||| | |||||||||| |||||||| ||| | ||||| Sbjct 5832 CCGGATTTA-TTGGGCGTAAAGCGTGCGTAGACGGTATAGTAAGT 5875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1495038310272