Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq7457 120 9e-23 >seq7457 Length=18238 Score = 120 bits (132), Expect = 9e-23 Identities = 789/1258 (63%), Gaps = 31/1258 (2%) Strand=Plus/Plus Query 1678 ATTACTGATGTCTACGCACGTGAAGTCCTTGACTCACGCGGTAACCCAACACTTGAAGTA 1737 |||| |||| | | || |||||| | ||||| ||||| || |||||||| || |||| Sbjct 11963 ATTATTGATATTTTTGCTCGTGAAATTCTTGATTCACGTGGCAACCCAACTGTTCAAGTT 12022 Query 1738 GAA-GT-TTACACTGAATCTGGTGCATTCGGTCGCGGTATGGTTCCTTCAGGAGCATCAA 1795 ||| || ||||| ||| || | || || || | || || ||||| || || | Sbjct 12023 GAATGTATTACA--GAAAACGGAGGGTTTGGCATCGCAAACGTACCCTCAGGGGCTTCTA 12080 Query 1796 CTGGTGAACACGAAGCAGTAGAACTTCGTGATGGTGACAAAGCTCGTTACGGTGGTCTTG 1855 | ||| |||||| ||||| | || |||||||||||| |||||| || | Sbjct 12081 CAGGTTCTAGAGAAGCATTAGAATTACGCGATGGTGACAAAAATCGTTATATGGGGAAAG 12140 Query 1856 GTACTCAAAAAGCAGTTGATAACGTAAACAACGTTATTGCTGAGCACATCATCGGATTCG 1915 | ||||||||| | || || || | || || || || | ||||| | Sbjct 12141 GCGTATGTAAAGCAGTTAAAAATGTTAATACCGAAATAGCAGAAGCTGTTATCGGTGCGG 12200 Query 1916 ACGTACGTGATCAACAAGGTATTGACCGCGCAATGATCGCTCTTGACGGTACTCCAAACA 1975 |||| ||| ||| | ||||||| ||||| | | | || || ||||| || | Sbjct 12201 ACGTTTTTGAACAAAGAATGATTGACCAAATTATGATTGATTTAGATGGCACTCCTAATA 12260 Query 1976 AAGGTAAACTT-GGTGCCAACGCTATTCTTGGTGTGTCTATCGCTGTAGCACGCGCAGCT 2034 | || | || || || || |||||| | || || || || ||||| || || || Sbjct 12261 A-GGAACGTTTAGGAGCTAATGCTATTTTAGGAGTATCAATGGCTGTTGCTGTAGCCGCA 12319 Query 2035 GCTGACTACCTTGAAGTTCCACTTTACAGCTACCTTGGCGGATTCAACACTAAAGTTCTT 2094 ||| || | |||| | || | || | || | || ||| | || || | | Sbjct 12320 GCTAACGAATATGAAATGCCGTTATATCGTTATTTGGGAGGAGTTAATCCTTGCACTTTA 12379 Query 2095 CCAACTCCAATGATGAACATCATCAACGGTGGTTCTCACTCAGACGCTCCAATCGCTTTC 2154 ||| ||| ||| | || || || ||||| |||||||| | || | || | |||| Sbjct 12380 CCAGTTCCGATGTTAAATATTATTAACGGGGGTTCTCATGCGGATAACACTATAGATTTC 12439 Query 2155 CAAGAATTTATGATTGTACCTGCTGGTGCACCAACATTCAAAGAAGCGCTTCGTTGGGGT 2214 ||||||||||||||| | || | || ||| | | || |||||||| | || | Sbjct 12440 CAAGAATTTATGATTATGCCAGTAGGAGCAGAATCTTTTAAAGAAGCCATCCGCACAGCA 12499 Query 2215 GCTGAAATCTTCCACGCGCTTAAGAAAATCCTTAAAGAACGTGGACTTGAAACAGCCGTA 2274 | ||||| || ||| | | || | || | ||| ||||| | || ||||| || Sbjct 12500 TCCGAAATTTTTCACACTTTAAAAAGTATATTAAAAAAACGTAATTTAGACACAGCAGTT 12559 Query 2275 GGTGACGAAGGTGGTTTCGCACCTCGTTTCGACGGAACTGAAGATGGTGTTGAAACTATC 2334 ||||||||||| || || || || ||| || ||| ||||| | | | || | | | Sbjct 12560 GGTGACGAAGGGGGGTTTGCCCCCAATTTAGAAACAACAGAAGAAGCTTTGGATATTTTA 12619 Query 2335 ATCAAAGCTATCGAAGCTGCTGGATATGTACCAGGTAAAGACGTATTTATC---GGACTT 2391 | ||||||| || ||||| ||| | || | | | |||| | | | Sbjct 12620 GTGGAAGCTATTAAAAAAGCTGGTTATAAAATTGGACCCAAGGGAGTTATGTTAGCAATA 12679 Query 2392 GACTGTGCATCATCTGAATTCTACGATGCAGAACGTAAAGTTTACGACTAC--------- 2442 ||| || | || |||||||| | | || ||| | ||| ||||| Sbjct 12680 GACGCGGCCGCTTCAGAATTCTATAACACTAAAGATAAGTTATACCACTACGTTGGCGAA 12739 Query 2443 ACTAAA--TTTGAAGGTGAAGGCGCTGCTGTTCGTACTGCTGCAGA---ACAAATCGACT 2497 || ||| |||| | || | | || || || |||| |||| | || | Sbjct 12740 ACCAAAGCTTTGCAAA--AAACCCAAGAAATTACTAGAACTACAGACCAACAAGTTGAAT 12797 Query 2498 ACCTTGAAGAATTGGTTAACAAA-TACCCAATCATCACTATCGAAGATGGTATGGACGAA 2556 | ||| | ||| || ||| || || || || |||| |||||||| | || ||| Sbjct 12798 AT-TTGTACCATTTGTACGAAAAGTATCCGATTATTTCTATTGAAGATGGGTTTGATGAA 12856 Query 2557 AACGACTGGGACGGTTGGAAATCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTT 2616 ||||| ||||| |||| || || | | || | ||| ||| || Sbjct 12857 AACGATTGGGAAGGTTTCCAAAAACTACAAGCAAAACTAAATAATAACAAGCAAACTGTG 12916 Query 2617 GGTGACGACTTCTTCGTAACTAACACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCT 2676 ||||| ||||| | |||||||| || || | | |||| ||||| | | ||| Sbjct 12917 GGTGATGACTTGTATGTAACTAATCCTAAATATGTGGCGCAAGGGATTGCCAATAAAGCT 12976 Query 2677 GCTAACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCT 2736 | ||| | | | || |||||||| ||||| || ||||| | |||||| |||| | Sbjct 12977 ACCAACGCGGTGTTGATTAAAGTTAATCAAATTGGGACTTTATCAGAAACTATTGATACC 13036 Query 2737 ATCGAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTAT--CACACCGTTCAGGTGAAA 2794 || | ||||| || ||| |||| | | ||| ||| | ||||| || ||||||| Sbjct 13037 ATTAATATGGCCCAAAGAGCAGGATGAA--GTTGTATTATTTCTCACCGCTCTGGTGAAA 13094 Query 2795 CTGAAGATTCAACAATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAG 2854 | | |||| | || |||||| | ||||| ||| ||| |||||||||| || || | Sbjct 13095 CAGCAGATACCTTTATTGCTGATTTAGCAGTGGCATTTAATACTGGTCAAATCAAAACCG 13154 Query 2855 GTTCATTGTCACGTACTGACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGA 2912 | || |||| ||| | ||||| ||||||||||| |||| ||| | | || ||||| Sbjct 13155 GATCTATGTCCCGTTCGGACCGCATTGCTAAATATAACCGTTTGTTACAAATTGAAGA 13212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155721446317332