Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq3416 170 4e-40 seq45717 165 1e-38 seq26258 165 1e-38 seq16889 165 1e-38 seq8576 152 9e-35 >seq3416 Length=585 Score = 170 bits (188), Expect = 4e-40 Identities = 214/288 (74%), Gaps = 12/288 (4%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||||| || |||| || | ||| | || ||||||||||| ||||||||||| | Sbjct 478 TGCTCTTCATTGAGTGTCGAGGTGGGCCGGCACGTTTACTTTGAACAAATTAGAGTGCTT 419 Query 100 AAAGCAGGC-----CTTTGCTCGAATAC-ATTAGCATGGAATAATAGAATAGGACGTGCG 153 ||||||||| ||| || |||||| | |||||||||||| ||||||||| | || Sbjct 418 AAAGCAGGCTAAAACTTCGCCTGAATACTGTGTGCATGGAATAATGGAATAGGACCT-CG 360 Query 154 GTTCTATTTTGTTGGTTTCTAGGA---CCGCCGTAATGATTAATAGGGATAGTCGGGGGT 210 |||||||||||||||||| | ||| ||| ||||||||||||||| | | ||||| Sbjct 359 GTTCTATTTTGTTGGTTT-TCGGAACCCCGAGGTAATGATTAATAGGAACGGATGGGGGC 301 Query 211 GTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAA 270 | ||||| || ||||||||||||||||||| ||||| || ||||| Sbjct 300 ATTCGTATTGCGACGTTAGAGGTGAAATTCTTGGATCGTCGCAAGACGGACAGAAGCGAA 241 Query 271 AGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||| || |||| | | ||||||| |||| ||||||||||||| || Sbjct 240 AGCATTTGCCAAAAACGCTTTCATTGATCA-AGAACGAAAGTTAGAGG 194 >seq45717 Length=6850 Score = 165 bits (182), Expect = 1e-38 Identities = 199/264 (75%), Gaps = 9/264 (3%) Strand=Plus/Plus Query 55 GTGCCGGGGA--GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT 112 ||| ||||| ||| | || ||||||||||| |||||||||||||||||||||||| Sbjct 335 GTGTCGGGGGCGGCCGGAACGTTTACTTTGAAGAAATTAGAGTGTTCAAAGCAGGCCGCC 394 Query 113 GCTC--GAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTT 170 | | | ||| ||||||||||||| ||||||||| | |||| | ||| |||||| Sbjct 395 ACGCCTGGATAGTCCAGCATGGAATAATGGAATAGGACCT-CGGTCCCATTGCGTTGGTC 453 Query 171 TCTAGGACCGCC--GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCA 228 | ||||| ||| |||||||| | ||||| | |||||| | ||||| || | Sbjct 454 T-TAGGAACGCGAGGTAATGATCGAGAGGGACTGACGGGGGCATTCGTATTGCGGCGTTA 512 Query 229 GAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGT 288 |||||||||||||||||| ||||| || ||||||||||| || ||||| |||| Sbjct 513 GAGGTGAAATTCTTGGATCGTCGCAAGACGGACGACTGCGAAAGCATTTGCCAAGAATGT 572 Query 289 TTTCATTAATCAGTGAACGAAAGT 312 ||||||| |||| |||||||||| Sbjct 573 TTTCATTGATCA-AGAACGAAAGT 595 >seq26258 Length=18207 Score = 165 bits (182), Expect = 1e-38 Identities = 199/264 (75%), Gaps = 9/264 (3%) Strand=Plus/Plus Query 55 GTGCCGGGGA--GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT 112 ||| ||||| ||| | || ||||||||||| |||||||||||||||||||||||| Sbjct 13206 GTGTCGGGGGCGGCCGGAACGTTTACTTTGAAGAAATTAGAGTGTTCAAAGCAGGCCGCC 13265 Query 113 GCTC--GAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTT 170 | | | ||| ||||||||||||| ||||||||| | |||| | ||| |||||| Sbjct 13266 ACGCCTGGATAGTCCAGCATGGAATAATGGAATAGGACCT-CGGTCCCATTGCGTTGGTC 13324 Query 171 TCTAGGACCGCC--GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCA 228 | ||||| ||| |||||||| | ||||| | |||||| | ||||| || | Sbjct 13325 T-TAGGAACGCGAGGTAATGATCGAGAGGGACTGACGGGGGCATTCGTATTGCGGCGTTA 13383 Query 229 GAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGT 288 |||||||||||||||||| ||||| || ||||||||||| || ||||| |||| Sbjct 13384 GAGGTGAAATTCTTGGATCGTCGCAAGACGGACGACTGCGAAAGCATTTGCCAAGAATGT 13443 Query 289 TTTCATTAATCAGTGAACGAAAGT 312 ||||||| |||| |||||||||| Sbjct 13444 TTTCATTGATCA-AGAACGAAAGT 13466 >seq16889 Length=2476 Score = 165 bits (182), Expect = 1e-38 Identities = 199/264 (75%), Gaps = 9/264 (3%) Strand=Plus/Plus Query 55 GTGCCGGGGA--GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT 112 ||| ||||| ||| | || ||||||||||| |||||||||||||||||||||||| Sbjct 1800 GTGTCGGGGGCGGCCGGAACGTTTACTTTGAAGAAATTAGAGTGTTCAAAGCAGGCCGCC 1859 Query 113 GCTC--GAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTT 170 | | | ||| ||||||||||||| ||||||||| | |||| | ||| |||||| Sbjct 1860 ACGCCTGGATAGTCCAGCATGGAATAATGGAATAGGACCT-CGGTCCCATTGCGTTGGTC 1918 Query 171 TCTAGGACCGCC--GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCA 228 | ||||| ||| |||||||| | ||||| | |||||| | ||||| || | Sbjct 1919 T-TAGGAACGCGAGGTAATGATCGAGAGGGACTGACGGGGGCATTCGTATTGCGGCGTTA 1977 Query 229 GAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGT 288 |||||||||||||||||| ||||| || ||||||||||| || ||||| |||| Sbjct 1978 GAGGTGAAATTCTTGGATCGTCGCAAGACGGACGACTGCGAAAGCATTTGCCAAGAATGT 2037 Query 289 TTTCATTAATCAGTGAACGAAAGT 312 ||||||| |||| |||||||||| Sbjct 2038 TTTCATTGATCA-AGAACGAAAGT 2060 >seq8576 Length=1413 Score = 152 bits (168), Expect = 9e-35 Identities = 196/262 (75%), Gaps = 10/262 (4%) Strand=Plus/Plus Query 55 GTGCCGGGGA--GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT 112 ||| ||||| ||| | || ||||||||||| |||||||||||||||||||||||| Sbjct 1156 GTGTCGGGGGCGGCCGGAACGTTTACTTTGAAGAAATTAGAGTGTTCAAAGCAGGCCGCC 1215 Query 113 GCTC--GAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTT 170 | | | ||| ||||||||||||| ||||||||| | |||| | ||| |||||| Sbjct 1216 ACGCCTGGATAGTCCAGCATGGAATAATGGAATAGGACCT-CGGTCCCATTGCGTTGGTC 1274 Query 171 TCTAGGACCGCC--GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCA 228 | ||||| ||| |||||||| | ||||| | |||||| | ||||| || | Sbjct 1275 T-TAGGAACGCGAGGTAATGATCGAGAGGGACTGACGGGGGCATTCGTATTGCGGCGTTA 1333 Query 229 GAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGT 288 |||||||||||||||||| ||||| || ||||||||||| || ||||| ||| Sbjct 1334 GAGGTGAAATTCTTGGATCGTCGCAAGACGGACGACTGCGAAAGCATTTGCCAAGAATG- 1392 Query 289 TTTCATTAATCAGTGAACGAAA 310 ||||||| |||| |||||||| Sbjct 1393 TTTCATTGATCA-AGAACGAAA 1413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914704693760