Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq45717 185 4e-44 seq45674 167 1e-38 seq28263 161 4e-37 seq23630 159 1e-36 seq33800 136 2e-29 seq18017 132 2e-28 seq26258 122 4e-25 >seq45717 Length=6850 Score = 185 bits (204), Expect = 4e-44 Identities = 231/322 (72%), Gaps = 45/322 (14%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGT---GT 461 || ||||||||| ||||||||||||||||||||||| | |||||| |||| | Sbjct 3379 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACACGTGCGCGAGTCGCAGGGTCGAGC 3438 Query 462 CAAACCCGTGCGCGTAATGAAAGTGAACGG----------------AGGTGGGAACCCGT 505 |||||| | ||| | |||| ||||| || |||||||| ||||| Sbjct 3439 GAAACCCTCGGGCGCAGTGAAGGTGAAAGGCGGCCCGGTCCGCCCGAGGTGGGATCCCGT 3498 Query 506 --------------------GAGGGTGCACCATCGACCGATC----CTGATGTCTTCGGA 541 | ||| |||||| || |||||| | | || | |||| Sbjct 3499 CCTGTCTTCGCAAGAGGCTGGCGGGCGCACCACCGGCCGATCTCGTCCGCTG-CGTCGG- 3556 Query 542 TGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAG 601 || | ||| |||||| | |||||||||||||||||||||||||||||| || || Sbjct 3557 TGAGGTCGAGCAAGAGCGCACGCGTTGGGACCCGAAAGATGGTGAACTATGCCCGAGCAG 3616 Query 602 GGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCG 661 || |||||||||||||||||||||||| || ||||||| ||||| ||||||||||||||| Sbjct 3617 GGCGAAGCCAGAGGAAACTCTGGTGGAAGCCCGCAGCGATTCTGACGTGCAAATCGATCG 3676 Query 662 TCAAATTTGGGTATAGGGGCGA 683 ||||| |||||||||||||||| Sbjct 3677 TCAAACTTGGGTATAGGGGCGA 3698 Score = 122 bits (134), Expect = 4e-25 Identities = 114/144 (79%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| |||||||| ||||||||| | || | || || ||| | | || || |||||| Sbjct 2778 GAGTCGGGTTGTTTGAGAATGCAGCCCAAAGGTCGGTGGCAAACTCCATCGAAGGCTAAA 2837 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || |||| ||||||||||||| ||||||| | || ||||| ||||||| |||||| | Sbjct 2838 TACTGGCACGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGTTGAAAAGAACTTTGAA 2897 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 2898 GAGAGAGTTCAAGAGTACGTGAAA 2921 >seq45674 Length=172867 Score = 167 bits (184), Expect = 1e-38 Identities = 109/120 (91%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||||| |||||||||||||||||||||||| || |||| ||||||||||||||||||| Sbjct 80802 TGTTGGAACCCGAAAGATGGTGAACTATGCCCGAGCAGGGCGAAGCCAGAGGAAACTCTG 80743 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| || ||||||| | ||| |||||||||||||||||||| |||||||||||||||| Sbjct 80742 GTGGAAGCCCGCAGCGATACTGACGTGCAAATCGATCGTCAAACTTGGGTATAGGGGCGA 80683 >seq28263 Length=100138 Score = 161 bits (178), Expect = 4e-37 Identities = 142/174 (82%), Gaps = 6/174 (3%) Strand=Plus/Plus Query 508 GGGTGCACCATCGACCGATC----CTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGC 563 ||| |||||| || |||||| | | || | |||| || | ||| |||||| | Sbjct 45210 GGGCGCACCACCGGCCGATCTCGTCCGCTG-CGTCGG-TGAGGTCGAGCAAGAGCGCACG 45267 Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||||||||||||||||||||||||||||| || |||| ||||||||||||||||||| Sbjct 45268 CGTTGGGACCCGAAAGATGGTGAACTATGCCCGAGCAGGGAGAAGCCAGAGGAAACTCTG 45327 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAG 677 ||||| || ||||||| ||||| |||||||||||||| ||||| |||||||||| Sbjct 45328 GTGGAAGCCCGCAGCGATTCTGACGTGCAAATCGATCATCAAACTTGGGTATAG 45381 >seq23630 Length=932 Score = 159 bits (176), Expect = 1e-36 Identities = 217/308 (70%), Gaps = 45/308 (15%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGT---GT 461 || ||||||||| ||||||||||||||||||||||| | |||||| |||| | Sbjct 306 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACACGTGCGCGAGTCGCAGGGTCGAGC 247 Query 462 CAAACCCGTGCGCGTAATGAAAGTGAACGG----------------AGGTGGGAACCCGT 505 |||||| | ||| | |||| ||||| || |||||||| ||||| Sbjct 246 GAAACCCTCGGGCGCAGTGAAGGTGAAAGGCGGCCCGGTCCGCCCGAGGTGGGATCCCGT 187 Query 506 --------------------GAGGGTGCACCATCGACCGATC----CTGATGTCTTCGGA 541 | ||| |||||| || |||||| | | || | |||| Sbjct 186 CCTGTCTTCGCAAGAGGCTGGCGGGCGCACCACCGGCCGATCTCGTCCGCTG-CGTCGG- 129 Query 542 TGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAG 601 || | ||| |||||| | |||||||||||||||||||||||||||||| || || Sbjct 128 TGAGGTCGAGCAAGAGCGCACGCGTTGGGACCCGAAAGATGGTGAACTATGCCCGAGCAG 69 Query 602 GGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCG 661 || |||||||||||||||||||||||| || ||||||| ||||| ||||||||||||||| Sbjct 68 GGCGAAGCCAGAGGAAACTCTGGTGGAAGCCCGCAGCGATTCTGACGTGCAAATCGATCG 9 Query 662 TCAAATTT 669 ||||| || Sbjct 8 TCAAACTT 1 Score = 122 bits (134), Expect = 4e-25 Identities = 114/144 (79%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| |||||||| ||||||||| | || | || || ||| | | || || |||||| Sbjct 604 GAGTCGGGTTGTTTGAGAATGCAGCCCAAAGGTCGGTGGCAAACTCCATCGAAGGCTAAA 545 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || |||| ||||||||||||| ||||||| | || ||||| ||||||| |||||| | Sbjct 544 TACTGGCACGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGTTGAAAAGAACTTTGAA 485 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 484 GAGAGAGTTCAAGAGTACGTGAAA 461 >seq33800 Length=37378 Score = 136 bits (150), Expect = 2e-29 Identities = 118/144 (82%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| || |||||| |||| |||| |||||| | | ||||| ||||||| Sbjct 36579 GAGTCGGGTTGCTTGAGAGTGCAGCCCTAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 36520 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || | ||| ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 36519 AT-GACCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAA 36461 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 36460 GAGAGAGTTCAATAGTACGTGAAA 36437 >seq18017 Length=695 Score = 132 bits (146), Expect = 2e-28 Identities = 108/131 (82%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 553 AAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAG 612 |||||| || | |||||||||||||||||||||||||||||| ||| |||| ||| Sbjct 78 AAGAGCGTACACGCTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGTCAG 137 Query 613 AGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGG 672 |||||| ||| |||||| || |||| ||||| ||||||||||||||||| | |||| Sbjct 138 GGGAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCGGAACTGGG 197 Query 673 TATAGGGGCGA 683 ||||||||||| Sbjct 198 TATAGGGGCGA 208 >seq26258 Length=18207 Score = 122 bits (134), Expect = 4e-25 Identities = 114/144 (79%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| |||||||| ||||||||| | || | || || ||| | | || || |||||| Sbjct 15638 GAGTCGGGTTGTTTGAGAATGCAGCCCAAAGGTCGGTGGCAAACTCCATCGAAGGCTAAA 15697 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || |||| ||||||||||||| ||||||| | || ||||| ||||||| |||||| | Sbjct 15698 TACTGGCACGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGTTGAAAAGAACTTTGAA 15757 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 15758 GAGAGAGTTCAAGAGTACGTGAAA 15781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078839126000