Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq3416 109 6e-22 seq45717 95.1 1e-17 seq26258 95.1 1e-17 seq16889 95.1 1e-17 seq8576 95.1 1e-17 >seq3416 Length=585 Score = 109 bits (120), Expect = 6e-22 Identities = 138/185 (75%), Gaps = 10/185 (5%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-----CTTTGCTCGAATAC-AT 63 || ||||||||||| ||||||||| | | ||||||||| ||| || |||||| | Sbjct 447 ACGTTTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTAAAACTTCGCCTGAATACTGT 388 Query 64 TACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCC-- 121 ||||||||||| ||||||||| | |||||||||||||| ||||| | ||| | || Sbjct 387 GTGCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACCCCGA 330 Query 122 CGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCT 181 |||||||| |||| | | | ||||| | ||||| || | |||||||||||| Sbjct 329 GGTAATGATTAATAGGAACGGATGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCT 270 Query 182 TGGAT 186 ||||| Sbjct 269 TGGAT 265 >seq45717 Length=6850 Score = 95.1 bits (104), Expect = 1e-17 Identities = 132/180 (73%), Gaps = 5/180 (3%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC--CTTTGCTCGAATACATTACC 67 || ||||||||||| ||||||||| ||||||||||||| | || | ||| | | Sbjct 353 ACGTTTACTTTGAAGAAATTAGAGTGTTCAAAGCAGGCCGCCACGCCTGGATAGTCCAGC 412 Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC-CCGTAA 126 |||||||||| ||||||||| | |||| | ||| || ||| | ||||| ||| |||| Sbjct 413 ATGGAATAATGGAATAGGACCT-CGGTCCCATTGCGTTGGTCT-TAGGAACGCGAGGTAA 470 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 |||| | | ||| | |||||| | ||||| || | ||||||||||||||||| Sbjct 471 TGATCGAGAGGGACTGACGGGGGCATTCGTATTGCGGCGTTAGAGGTGAAATTCTTGGAT 530 >seq26258 Length=18207 Score = 95.1 bits (104), Expect = 1e-17 Identities = 132/180 (73%), Gaps = 5/180 (3%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC--CTTTGCTCGAATACATTACC 67 || ||||||||||| ||||||||| ||||||||||||| | || | ||| | | Sbjct 13224 ACGTTTACTTTGAAGAAATTAGAGTGTTCAAAGCAGGCCGCCACGCCTGGATAGTCCAGC 13283 Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC-CCGTAA 126 |||||||||| ||||||||| | |||| | ||| || ||| | ||||| ||| |||| Sbjct 13284 ATGGAATAATGGAATAGGACCT-CGGTCCCATTGCGTTGGTCT-TAGGAACGCGAGGTAA 13341 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 |||| | | ||| | |||||| | ||||| || | ||||||||||||||||| Sbjct 13342 TGATCGAGAGGGACTGACGGGGGCATTCGTATTGCGGCGTTAGAGGTGAAATTCTTGGAT 13401 >seq16889 Length=2476 Score = 95.1 bits (104), Expect = 1e-17 Identities = 132/180 (73%), Gaps = 5/180 (3%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC--CTTTGCTCGAATACATTACC 67 || ||||||||||| ||||||||| ||||||||||||| | || | ||| | | Sbjct 1818 ACGTTTACTTTGAAGAAATTAGAGTGTTCAAAGCAGGCCGCCACGCCTGGATAGTCCAGC 1877 Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC-CCGTAA 126 |||||||||| ||||||||| | |||| | ||| || ||| | ||||| ||| |||| Sbjct 1878 ATGGAATAATGGAATAGGACCT-CGGTCCCATTGCGTTGGTCT-TAGGAACGCGAGGTAA 1935 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 |||| | | ||| | |||||| | ||||| || | ||||||||||||||||| Sbjct 1936 TGATCGAGAGGGACTGACGGGGGCATTCGTATTGCGGCGTTAGAGGTGAAATTCTTGGAT 1995 >seq8576 Length=1413 Score = 95.1 bits (104), Expect = 1e-17 Identities = 132/180 (73%), Gaps = 5/180 (3%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC--CTTTGCTCGAATACATTACC 67 || ||||||||||| ||||||||| ||||||||||||| | || | ||| | | Sbjct 1174 ACGTTTACTTTGAAGAAATTAGAGTGTTCAAAGCAGGCCGCCACGCCTGGATAGTCCAGC 1233 Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC-CCGTAA 126 |||||||||| ||||||||| | |||| | ||| || ||| | ||||| ||| |||| Sbjct 1234 ATGGAATAATGGAATAGGACCT-CGGTCCCATTGCGTTGGTCT-TAGGAACGCGAGGTAA 1291 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 |||| | | ||| | |||||| | ||||| || | ||||||||||||||||| Sbjct 1292 TGATCGAGAGGGACTGACGGGGGCATTCGTATTGCGGCGTTAGAGGTGAAATTCTTGGAT 1351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511731564800