Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq51498 111 1e-19 seq1 104 2e-17 >seq51498 Length=41259 Score = 111 bits (122), Expect = 1e-19 Identities = 167/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 66241 TTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGG 66300 ||| ||||||| ||| || || ||||| || || |||| ||||| | | ||| Sbjct 9130 TTCATAGAGGTCTTCAAATTCTTTTCCCCAGACATCATGAAGACCAGGACATTCATTTGG 9071 Query 66301 ACACATCAGCGACCAATCACCATCCTGTTCT--ACACGACGCATAAATAGATCAGGTATC 66358 |||||||| | |||||| | || ||| ||||| ||| || |||||||| ||| Sbjct 9070 ACACATCAATGTCCAATCTTGGT--TGGTCTCAACACGTTTCATGAACAGATCAGGAATC 9013 Query 66359 CAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATTTT-TGCGCA 66416 || || || || || ||||| | ||||| ||| || || | || ||| |||| | ||| Sbjct 9012 CACAGAGCATAAAAAAGATCTCTTGCTCTTTGTTCTTCCTTTCCTGTGTTTTTCTTAGCA 8953 Query 66417 AGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAA 66468 || | ||| ||||||||||| |||||||||||||||| ||| ||||| || Sbjct 8952 --TCCAAGAAATCAAAGATGTCTGCATGCCATGGTTCCAAGTAAATGGCAAA 8903 >seq1 Length=778493 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAAT 61455 ||||||||||| || || || |||| | ||||| |||| || | ||||| || || Sbjct 566791 TTGTTCAATGCTATTGAAACTTTACCACCAGTGAAAAGGAAGGCACAGTGGGCATTGAAC 566850 Query 61456 TGGATCACCAGT-ACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGA 61514 ||||||| | |||| || || | ||||||||| | ||||||| || | || || Sbjct 566851 TGGATCAATGCTGACAA-TGCCACCTATGGTGAACGGGTTGTGGCATTCGCTGCTGTTGA 566909 Query 61515 GGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTAT 61574 || | |||||| ||| |||||||| |||| || |||||||| ||| | || || || Sbjct 566910 AGGGATCTTTTTCTCTGGCTCGTTTGCTTCAATTTTCTGGTTGAAAAAAAGGGGTCTGAT 566969 Query 61575 GCCCGGTCTGACCTTCAGCAATGA 61598 ||| ||| |||||||| ||||| Sbjct 566970 GCCTGGTTTGACCTTCTCTAATGA 566993 Score = 100 bits (110), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 ||||||| || | | || |||||||||||||| ||| | || || || |||| | | Sbjct 565005 ATGAACCGCTGCTTCGTGACAATCCTCGTCGTTTTGTAATTTTTCCAATAAAGTACCACG 565064 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144 | || |||| |||||||| || || |||||||| |||||||| | ||||| || || Sbjct 565065 ACATCTGGCAGATGTACAAGAAAGCAGAAGCTTCGTTCTGGACTGCTGAGGAAGTGGACC 565124 Query 61145 TGTCCAAAGACATGAATGACTGGG--AGCGTTTATCGAGCGGTGAACAACATTTCATTAA 61202 | || |||||| || | | |||| ||| | | | || ||| ||||| ||| Sbjct 565125 TTTCAAAAGACTTGGCTCATTGGGCCAGCCTCAA--GGACGATGAGAGGCATTTTATTTC 565182 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTT 61253 ||||| || || |||||||| || || || || |||||||| ||||| Sbjct 565183 GCATGTTTTAGCATTCTTTGCTGCCAGTGATGGGATTGTCAATGAAAATTT 565233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397305769116800