Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpa_20thompsoni_20[genbank_20GCA_5F001749815.1_202016-09-29] 478,281 sequences; 318,747,957 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq445936 235 1e-59 seq355038 197 3e-48 seq464184 80.6 5e-13 >seq445936 Length=213 Score = 235 bits (260), Expect = 1e-59 Identities = 174/202 (86%), Gaps = 1/202 (0%) Strand=Plus/Plus Query 67 CAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTA 126 |||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| | Sbjct 13 CAGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTATTGCTTGAATACATGA 72 Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAA 186 |||||||||||| ||||||||| | ||| | |||||||||||||||||||||| |||| Sbjct 73 GCATGGAATAATGGAATAGGACTTT-GGTCCCATTTTGTTGGTTTCTAGGACCGAAGTAA 131 Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 ||||||| ||||| | | ||||| || ||||| |||||||||||||||||||||||| Sbjct 132 TGATTAAGAGGGACAATTGGGGGCATCCGTATTTCGTTGTCAGAGGTGAAATTCTTGGAT 191 Query 247 TTATTGAAGACTAACTACTGCG 268 ||| ||||| |||| ||||| Sbjct 192 TTACGAAAGACGAACTTCTGCG 213 >seq355038 Length=269 Score = 197 bits (218), Expect = 3e-48 Identities = 201/256 (79%), Gaps = 6/256 (2%) Strand=Plus/Minus Query 66 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT-GCTCGAATACAT 124 || ||| ||||| ||||||||||||||||||||||||||||| | ||| ||||| Sbjct 266 CCGGGAAGTTTACCTTGAAAAAATTAGAGTGTTCAAAGCAGGCTTAAAGCTTGAATAATG 207 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC-- 182 | |||||||||||| ||||||||| | |||||||||||||||||||| | ||| ||| Sbjct 206 TTGCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAGCGCGAG 149 Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||| ||| | | |||||| || ||| | || ||||||||||||||| Sbjct 148 GTAATGATTAAGAGGAACGGACGGGGGCATCCGTACTGTGCCGTTAGAGGTGAAATTCTT 89 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||| ||||| ||| ||||||||||| || ||||| |||||||| ||||||| Sbjct 88 GGATCGGCGCAAGACGAACAACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCA-A 30 Query 303 GAACGAAAGTTAGGGG 318 || ||||||| || || Sbjct 29 GAGCGAAAGTCAGAGG 14 >seq464184 Length=206 Score = 80.6 bits (88), Expect = 5e-13 Identities = 73/91 (80%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 223 TTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAA 282 ||||||||||||||||||||||||||| ||||| | | |||| ||||||||| | || Sbjct 56 TTGTCAGAGGTGAAATTCTTGGATTTACGAAAGACGACCAACTGTGAAAGCGTTTTCGAA 115 Query 283 GGATGTTTTCATTAATCAGTGAACGAAAGTT 313 | ||| |||| |||| | |||||||||| Sbjct 116 GAGTGTCTTCAGTAATGA-AAAACGAAAGTT 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 910822772288