Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpa_20thompsoni_20[genbank_20GCA_5F001749815.1_202016-09-29] 478,281 sequences; 318,747,957 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq428052 188 3e-45 seq148782 118 4e-24 seq140591 109 2e-21 >seq428052 Length=222 Score = 188 bits (208), Expect = 3e-45 Identities = 142/166 (86%), Gaps = 1/166 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||||||||||||||| |||||||| |||| || |||||||| | ||||||||||||| Sbjct 1 GAGTCGAGTTGTTTGGGATTGCAGCTC-AAATCGGTGGTAAATTCCATCTAAAGCTAAAT 59 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 |||||| ||||||||||||||||||||| |||| |||||||| |||| |||||| || Sbjct 60 ATTGGCGGGAGACCGATAGCGCACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAA 119 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCA 205 |||||||||||||| ||||||| ||| | |||||||| |||| Sbjct 120 AGAGAGTTAAAAAGTGCGTGAAACCGTTAGAGGGGAAGCGAATGCA 165 >seq148782 Length=574 Score = 118 bits (130), Expect = 4e-24 Identities = 91/108 (84%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| | |||||| |||| |||| |||||||| | |||| ||||||||| | ||||||||| Sbjct 108 TTCTATGAGTCGGGTTGCTTGGTAATGCAGCCCAAAATTGGAGGTAAACTCCTTCTAAAG 49 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAG 141 |||||||||||| ||||||||||||| ||||||| |||| ||||| Sbjct 48 CTAAATATTGGCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAG 1 >seq140591 Length=604 Score = 109 bits (120), Expect = 2e-21 Identities = 154/218 (71%), Gaps = 29/218 (13%) Strand=Plus/Plus Query 394 ATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGT 453 |||||| | ||| ||||||||| |||||||||||||||||||||||| | ||||||| | Sbjct 388 ATGGTTTCATGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCGAGTCT 447 Query 454 TTGGGTG--TCAAACCCGTGCGCGTAATGAAAGT------------GAACGGAGGTGGGA 499 | ||||| | ||||||| || ||||||||| || | |||||| || Sbjct 448 TAGGGTGATTGAAACCCGCAGGCACAATGAAAGTAAAGGCTCTTCGGAGCTGAGGTGAGA 507 Query 500 ACCCGT------------GAGGGTGCACCATCGACCGATCCTGATGTCTTC--GGATGGA 545 | | | ||| | ||| |||||||||| ||| | | || || | Sbjct 508 TCTCTTCGGTTTCGGCCGGAGAGCGCATCATCGACCGA-CCTCTTCTAATCCTAGAAAGG 566 Query 546 TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGG 583 |||||||||||||| | ||||||||||||||||||||| Sbjct 567 TTTGAGTAAGAGCACATCTGTTGGGACCCGAAAGATGG 604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2069740872550