Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpa_20thompsoni_20[genbank_20GCA_5F001749815.1_202016-09-29] 478,281 sequences; 318,747,957 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq267010 277 3e-72 seq174873 235 1e-59 seq8297 235 1e-59 >seq267010 Length=354 Score = 277 bits (306), Expect = 3e-72 Identities = 252/313 (81%), Gaps = 10/313 (3%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCG---CCGGCTTCT 76 || ||||||||||||| ||||||||| || || || || ||| | | ||||| Sbjct 48 GAACGAGACCTTAACCGGCTAAATAGTCATGCGA---TTCTCGAATCGTAACTGACTTCT 104 Query 77 TAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 |||||||||| | || | | || | | || |||||||||||||||||||||||| Sbjct 105 TAGAGGGACTGTTGGTGTTTAACCAAAGTCAGGA--AGGCAATAACAGGTCTGTGATGCC 162 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 |||||||||||||||||||||||||||||||||| | || || ||||| | | ||||| Sbjct 163 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGTCGGATTCAGCGAGT-CTTAACCTTA 221 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 ||| ||||| ||||||||||| | ||| || | |||| ||||||| || |||||||||| Sbjct 222 ACCGAAAGGTTTGGGTAATCTTTTGAAAGTCCGACGTGATGGGGATTGATCATTGCAATT 281 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 |||| || | |||||||||| |||||||| ||| ||||||||| ||||||||||||||| Sbjct 282 ATTGATCATGAACGAGGAATTCCTAGTAAATGCGAGTCATCAGCTCGCGTTGATTACGTC 341 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 342 CCTGCCCTTTGTA 354 >seq174873 Length=553 Score = 235 bits (260), Expect = 1e-59 Identities = 204/248 (82%), Gaps = 4/248 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||||| ||| | |||| || | ||||| |||||||||||||||| Sbjct 309 CTTCTTAGAGGGACTAGTGGCGTTTAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 366 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||| |||||||||||||||||||||||| | || || || | || Sbjct 367 ATGCCCTTAGATGTTCGGGGCCGCACGCGCGCTACACTGACCGGATCATCGTGTGCTTC- 425 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||||||||| |||| | |||||||| | || | | |||||||| ||||||| | |||| Sbjct 426 CCTTGGCCGAAAGGCCCGGGTAATCCCTTGAACCCCGGTCGTGCTAGGGATAGGGAATTG 485 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| || | ||| |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 486 CAATTGTTTCCCTTGAACGAGGAATTCCCAGTAAGCGCGAGTCATTAGCTCGCGTTGATT 545 Query 311 ACGTCCCT 318 |||||||| Sbjct 546 ACGTCCCT 553 >seq8297 Length=10145 Score = 235 bits (260), Expect = 1e-59 Identities = 204/248 (82%), Gaps = 4/248 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||||| ||| | |||| || | ||||| |||||||||||||||| Sbjct 8685 CTTCTTAGAGGGACTAGTGGCGTTTAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 8742 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||| |||||||||||||||||||||||| | || || || | || Sbjct 8743 ATGCCCTTAGATGTTCGGGGCCGCACGCGCGCTACACTGACCGGATCATCGTGTGCTTC- 8801 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||||||||| |||| | |||||||| | || | | |||||||| ||||||| | |||| Sbjct 8802 CCTTGGCCGAAAGGCCCGGGTAATCCCTTGAACCCCGGTCGTGCTAGGGATAGGGAATTG 8861 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| || | ||| |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 8862 CAATTGTTTCCCTTGAACGAGGAATTCCCAGTAAGCGCGAGTCATTAGCTCGCGTTGATT 8921 Query 311 ACGTCCCT 318 |||||||| Sbjct 8922 ACGTCCCT 8929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 942669722368