Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpa_20thompsoni_20[genbank_20GCA_5F001749815.1_202016-09-29] 478,281 sequences; 318,747,957 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq14090 279 2e-72 seq172868 250 8e-64 seq369030 244 3e-62 seq131772 215 2e-53 seq43969 201 4e-49 seq144690 156 1e-35 seq426000 140 1e-30 seq467999 123 8e-26 seq460677 120 1e-24 seq150435 114 4e-23 seq406944 104 8e-20 seq53210 93.3 1e-16 >seq14090 Length=2508 Score = 279 bits (308), Expect = 2e-72 Identities = 296/387 (76%), Gaps = 24/387 (6%) Strand=Plus/Plus Query 54 CACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||| |||| ||| ||||||||||||||||||| ||| || || ||| ||| Sbjct 1 CACCTAAGTTACTCTTTGACAGATGTGCCGCCCCAGCTAAATTCTCCGCCTAACA----- 55 Query 114 ATCAACCCGGATCGGCCCGCGAAGGACCTTAACGCCAGAAAAT-GGTCGGTGAAGA-CCA 171 ||||||| || || | ||||| || || | || | | |||| ||| Sbjct 56 -------CGGATCGCGCCCCGTGTAAGCTTAAGGCGAGCATCGAGGCCCGCGAAGGGCCA 108 Query 172 GTTCCGCTTCATTGATTAAGTa--aaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-C 228 || | | ||| ||||| ||||||| || || ||| ||||||||| | | Sbjct 109 CTTTTCGGTAACTGAATAAGTTTTAAAAAAC-ATCAGAGTA------TTTCACTTGTGAC 161 Query 229 CGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTC 288 | || | ||||||||||| |||| ||||||| ||| |||||| ||||||||||||||| Sbjct 162 CCGAAGGCCTCCCACTTATCCTACGCCTCTCATGTCTCTTCACAGAGTCGGACTAGAGTC 221 Query 289 AAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGT 348 ||| || ||||||| ||||||||||||| |||| |||||| |||||||||||||| ||| Sbjct 222 AAGATCCACAGGGTTTTCTTTCCCCGCTAATTCTTCCAAGCGCGTTCCCTTGGCTGCGGT 281 Query 349 TTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTA 408 ||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 282 TTCGCTAGATAATAGATAGGGACAGCGGGAATCTCGTTGATCCATTCATGCGCGTCACTA 341 Query 409 ATTAGATGACGAGGCATTTGGCTACCT 435 ||||||||| ||| ||||| ||| ||| Sbjct 342 ATTAGATGATGAGACATTTTGCTTCCT 368 Score = 172 bits (190), Expect = 2e-40 Identities = 98/100 (98%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 976 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGATTGAATTTCTTCACTTTGAC 1035 Query 497 ATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCA 536 ||||||||||||||||||||||||||||||||||||| || Sbjct 1036 ATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCA 1075 >seq172868 Length=501 Score = 250 bits (276), Expect = 8e-64 Identities = 226/282 (80%), Gaps = 18/282 (6%) Strand=Plus/Minus Query 157 GGTCGGTGAAGACCAG--TTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGG 214 |||| | |||| || | |||||||| | ||| ||||||||| |||||| || || | Sbjct 367 GGTCCGCGAAGGCCCGCTTTCCGCTTAACTGAATAAGTAAAACAACGATCAGATCAGAGA 308 Query 215 --TATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACA 272 ||||||||||||| | | ||||||||||||| |||| | |||| ||| ||||||| Sbjct 307 GATATTTCACTTGCGACCTGAAGGCTCCCACTTATCCTACGACACTCATGTCTTTTCACA 248 Query 273 AAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCG 332 ||||||||||| |||||||||| |||||| ||| ||||||||| |||| ||||| Sbjct 247 TAGTCGGACTAGCGTCAAGCTCATCAGGGTGTTCCTTCCCCGCTAATTC-----TGCCCG 193 Query 333 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA 392 ||||||||| ||||||||| ||||||||| ||| || |||||||||||| ||| | Sbjct 192 TTCCCTTGGTTGTGGTTTCCCTAGATAGT------GGATAGCGGGAATCTCGTTCATCAA 139 Query 393 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACC 434 ||||||||||||||||||||||| |||||||||||||||| Sbjct 138 TTCATGCGCGTCACTAATTAGAT---GAGGCATTTGGCTACC 100 >seq369030 Length=259 Score = 244 bits (270), Expect = 3e-62 Identities = 213/260 (82%), Gaps = 5/260 (2%) Strand=Plus/Plus Query 101 ACCTGACAATGTCATCAACCCGGATCGGCCCGCGAA--GGACCTTAACGCCAGAAAATGG 158 |||||||| |||| || || ||||||| || || || || |||||| | |||||||| Sbjct 3 ACCTGACAGTGTCTTCGACACGGATCGACC-GCCAACGGGGCCTTAATTCTAGAAAATGA 61 Query 159 TCGGTGAAGACCAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATT 218 | |||||| | ||||||| || || ||||||||||||| ||||| ||||||||||| Sbjct 62 GCCGTGAAGCTCGCTTCCGCTCAATCGAATAAGTAAAAAAACTATAAGAGTAGTGGTATT 121 Query 219 TCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCG 278 |||||| || | | |||||||| ||||||||||||| | ||| |||||||||||| Sbjct 122 TCACTTTTGCATTA-CTGCTCCCACCTATTCTACACCTCCTATGTCTTTTCACAAAGTCA 180 Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 |||||||||||||||||||||||||||||||||||||||||| | | |||||||||| Sbjct 181 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTTTG-CGTGCCCGTTCCCC 239 Query 339 TGGCTGTGGTTTCGCTAGAT 358 |||||||||||||||||| Sbjct 240 ACGCTGTGGTTTCGCTAGAT 259 >seq131772 Length=641 Score = 215 bits (238), Expect = 2e-53 Identities = 187/229 (82%), Gaps = 10/229 (4%) Strand=Plus/Plus Query 162 GTGAAGACCAG--TTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTT 219 ||||||| | | |||||||| | ||| |||||||| ||| || || | |||||||||| Sbjct 420 GTGAAGAGCCGCTTTCCGCTTAACTGAATAAGTAAAGAAAA-ATCAGAGCAGTGGTATTT 478 Query 220 CACTTGCG-CCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCG 278 |||||||| || || | ||||| ||||| ||| ||| ||| ||| |||| | | ||| Sbjct 479 CACTTGCGACCCGAAGGCCTCCCTCTTATCATACGCCTATCATGTCTCTTCAGAGATTCG 538 Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 ||||||||||||||||||||||||| |||||||||||| |||| |||||| |||| Sbjct 539 GACTAGAGTCAAGCTCAACAGGGTCATCTTTCCCCGCTAATTCTGCCAAG------CCCT 592 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 387 ||||||||||||| ||||||||||||||| | ||| ||||||||||||| Sbjct 593 TGGCTGTGGTTTCACTAGATAGTAGATAGAGCCAGCGGGAATCTCGTTA 641 >seq43969 Length=2655 Score = 201 bits (222), Expect = 4e-49 Identities = 173/210 (82%), Gaps = 13/210 (6%) Strand=Plus/Plus Query 198 aaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGC-TCCCACTTATTCTACACCT 256 |||||| | || ||||||||||||||||| || | ||| |||||||||| |||| ||| Sbjct 106 AACGATTTGAGTGGTGGTATTTCACTTGCGACGCGAAGGCCTCCCACTTATCCTACGCCT 165 Query 257 CTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG--GGTCTTCTTTCCCCG 314 ||| ||| |||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 166 CTCCTGTCTCTTCACAGAGTCGGACTAGAGTCAAGCTCAACAGTCAGTCTTCTTTCCCCG 225 Query 315 CTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGT 374 || |||| |||||| ||||| |||||||||||||| |||||||||||| || Sbjct 226 CTAATTCTGCCAAG-------CCTTGCTTGTGGTTTCGCTAGGTAGTAGATAGGG--AGC 276 Query 375 GGGAATCTCGTTAATCCATTCATGCGCGTC 404 |||||||||||||||||| ||| |||||| Sbjct 277 GGGAATCTCGTTAATCCA-TCACACGCGTC 305 >seq144690 Length=589 Score = 156 bits (172), Expect = 1e-35 Identities = 111/126 (88%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 249 CTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTT 308 |||| ||||||| ||| |||||| ||| ||||||||||||||||||||||||||||||| Sbjct 2 CTACGCCTCTCATGTCTCTTCACAGAGTTGGACTAGAGTCAAGCTCAACAGGGTCTTCTT 61 Query 309 TCCC-CGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG 367 |||| ||| |||| |||||||| |||||||||||||| ||| ||||||||||||||| Sbjct 62 TCCCAGGCTAATTCTGCCAAGCCAGTTCCCTTGGCTGTAATTTTACTAGATAGTAGATAG 121 Query 368 GGACAG 373 |||||| Sbjct 122 GGACAG 127 >seq426000 Length=224 Score = 140 bits (154), Expect = 1e-30 Identities = 79/80 (99%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1 CTAGATAGTAGATAGGGACAGCGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 60 Query 413 GATGACGAGGCATTTGGCTA 432 |||||||||||||||||||| Sbjct 61 GATGACGAGGCATTTGGCTA 80 >seq467999 Length=204 Score = 123 bits (136), Expect = 8e-26 Identities = 74/78 (95%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1 AGATAGTAAATAGGGACAGCTGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 60 Query 415 TGACGAGGCATTTGGCTA 432 ||||||||||| |||||| Sbjct 61 TGACGAGGCATGTGGCTA 78 >seq460677 Length=207 Score = 120 bits (132), Expect = 1e-24 Identities = 91/106 (86%), Gaps = 6/106 (6%) Strand=Plus/Minus Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGC----CGTTTACCCGCGCTTGGTTGAAT 482 ||||| || ||||||||| |||||||||| || ||||||||||||||| |||| || Sbjct 104 TGGCT--CTCAAGAGAGTCTTAGTTACTCCGGCAAGCCGTTTACCCGCGCTTCGTTGCAT 47 Query 483 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGT 528 ||||||||||||||||| |||||| ||| ||||||||||||| ||| Sbjct 46 TTCTTCACTTTGACATTGAGAGCAGTGGCCAGAAATCACATTTCGT 1 >seq150435 Length=567 Score = 114 bits (126), Expect = 4e-23 Identities = 85/100 (85%), Gaps = 7/100 (7%) Strand=Plus/Minus Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496 |||| |||||||||| ||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 113 AAGAAAGTCATAGTTTCTCCCGCCGTTTACCCGCGTTTGATTGAATTTCTTCACTTTGAC 54 Query 497 ATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCA 536 ||||| | |||||||||||||| ||||||| || Sbjct 53 ATTCA-------GTGCAGAAATCACATTCAGTCAACAACA 21 >seq406944 Length=235 Score = 104 bits (114), Expect = 8e-20 Identities = 128/169 (76%), Gaps = 11/169 (7%) Strand=Plus/Minus Query 47 CTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGA 106 ||||||| || ||||||| ||| |||||||||||||||| |||||||||||| ||||| Sbjct 208 CTTAGGATACATGCGTTACTCTTTGACAGATGTGCCGCCCCGGCCAAACTCCCCGCCTGA 149 Query 107 CAATGTCATCAACCCGGATCG-GCC-CGCGAA--GGACCTTAACGCCAGAAAAT---GGT 159 | ||| ||| ||||||| ||| || ||| || |||||| || |||||| | Sbjct 148 AACGGTCTTCAGAGCGGATCGCGCCGCGTGAAGGGGCCCTTAAGGC--GAAAATCGAAGC 91 Query 160 CGGTGAAGACCAG--TTCCGCTTCATTGATTAAGTaaaaaaaCGATAAG 206 | | ||| | | |||||||| | ||| |||||||||||||||| || Sbjct 90 CCGCCAAGGGCTGCTTTCCGCTTAACTGAATAAGTAAAAAAACGATCAG 42 >seq53210 Length=1019 Score = 93.3 bits (102), Expect = 1e-16 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 24 ATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCG 83 |||||||| ||| |||| | |||| |||||||||||||| ||| |||||||||||| Sbjct 685 ATTTCTGTCCTCACTGAGCTCTCCTTGGGACACCTGCGTTACTCTTTGACAGATGTGCCG 626 Query 84 CCCCAGCCAAACTCCCCACCTGACAATGTCATCA 117 |||||||||||||| || |||| || ||| ||| Sbjct 625 CCCCAGCCAAACTCTCCTCCTGTCATGGTCTTCA 592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1627379149088