Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpa_20thompsoni_20[genbank_20GCA_5F001749815.1_202016-09-29] 478,281 sequences; 318,747,957 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq137127 125 1e-26 seq89801 93.3 7e-17 seq97231 91.5 2e-16 seq89904 91.5 2e-16 seq176601 89.7 8e-16 seq56942 89.7 8e-16 seq255453 80.6 4e-13 seq243303 80.6 4e-13 seq352569 78.8 2e-12 seq148569 77.0 5e-12 seq65046 77.0 5e-12 seq342606 75.2 2e-11 seq145044 75.2 2e-11 seq181231 73.4 6e-11 seq60344 73.4 6e-11 seq12289 73.4 6e-11 >seq137127 Length=617 Score = 125 bits (138), Expect = 1e-26 Identities = 103/123 (84%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| |||||| ||||| || ||| ||||| | Sbjct 528 GTACGAGAGGAACCGCAGA-TTCAGAC-AATTGGCATTTGCACTTGCTTGAAAAGGCAAT 471 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||||| ||||||||| |||||||||||||||||||||||| ||| | Sbjct 470 GGTGCGAAGCTACCATCTGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGTGCTA 411 Query 121 GAA 123 ||| Sbjct 410 GAA 408 >seq89801 Length=946 Score = 93.3 bits (102), Expect = 7e-17 Identities = 90/112 (80%), Gaps = 3/112 (3%) Strand=Plus/Plus Query 3 ACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGC 62 |||||||||||||| || |||||| | |||||| | | || |||| || || || Sbjct 439 ACGAGAGGAACCGCAGA-TTCAGAC-ATTTGGTTCATA-GTTTGGCTGATAAGCCAATGG 495 Query 63 CGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 ||||| |||||||||| |||||||| |||||||||||||||||||||||| Sbjct 496 TGCGAATCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 547 >seq97231 Length=865 Score = 91.5 bits (100), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 || |||||||||||||| ||| |||| | |||||| || | || |||| | || | Sbjct 395 GTTCGAGAGGAACCGCG-AATCCAGAC-ATTTGGTTCATGTGCTTGGCTGATATGCCAAT 452 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||||||||||| |||||||| ||||||| |||||||||||||||| Sbjct 453 GGTGCGAAGCTACCATCTTAGGGATTATGACTGAACGACTCTAAGTCAGAATCC 506 >seq89904 Length=944 Score = 91.5 bits (100), Expect = 2e-16 Identities = 91/114 (80%), Gaps = 3/114 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| | ||| || || | || ||| || || | Sbjct 285 GTACGAGAGGAACCGCAGA-TTCAGAC-ATTTGATTCATGTGTCTTGCTGGTAAG-CAAT 229 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||||||||| ||| |||||||| |||||||| ||||||||||||||| Sbjct 228 GGTGCGAAGCTACCATATGCGGGATTATGACTGAACGCTTCTAAGTCAGAATCC 175 >seq176601 Length=2796 Score = 89.7 bits (98), Expect = 8e-16 Identities = 91/115 (79%), Gaps = 3/115 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGC-AG 59 ||||||||||||| || || |||||| || |||||| || | || |||| || | | Sbjct 1790 GTACGAGAGGAACGGCAGA-TTCAGA-TATTTGGTTCATGTGCTTGGCTGATAAGCCCAA 1847 Query 60 TGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 || |||||| ||||||||| |||||||| |||||| || |||||||||||||| Sbjct 1848 TGGTGCGAAGTTACCATCTGAGGGATTATGACTGAACACCACTAAGTCAGAATCC 1902 >seq56942 Length=2796 Score = 89.7 bits (98), Expect = 8e-16 Identities = 91/115 (79%), Gaps = 3/115 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGC-AG 59 ||||||||||||| || || |||||| || |||||| || | || |||| || | | Sbjct 1790 GTACGAGAGGAACGGCAGA-TTCAGA-TATTTGGTTCATGTGCTTGGCTGATAAGCCCAA 1847 Query 60 TGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 || |||||| ||||||||| |||||||| |||||| || |||||||||||||| Sbjct 1848 TGGTGCGAAGTTACCATCTGAGGGATTATGACTGAACACCACTAAGTCAGAATCC 1902 >seq255453 Length=369 Score = 80.6 bits (88), Expect = 4e-13 Identities = 90/115 (78%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTT-TGCGGCTGTCTGACCAGGCAG 59 ||||||||||||| ||| ||| ||| || ||||||| || | || |||| | || Sbjct 215 GTACGAGAGGAAC-GCGAGATTAAGA-TATTTGGTTTAATGTGCTTGGCTGATAGGCCAA 272 Query 60 TGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 || || ||||||||||||| |||||||| |||||| |||||||||||||||| Sbjct 273 TGGTGCAAAGCTACCATCTGAGGGATTATGACTGAAC-TCTCTAAGTCAGAATCC 326 >seq243303 Length=386 Score = 80.6 bits (88), Expect = 4e-13 Identities = 89/115 (77%), Gaps = 3/115 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||| ||||| || |||||| | |||||| || | || |||| || || | Sbjct 265 GTACGAGATGAACCCTAGA-TTCAGAC-ATTTGGTTCATGTGTTTGGCTGATAAGCCAAT 208 Query 61 GCCGCGAAGCTACCATCT-GCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||| | |||||||| |||||||| ||||||||||||||| Sbjct 207 GGTACGAAGCTACCATCTAGGGGGATTATGACTGAACGCATCTAAGTCAGAATCC 153 >seq352569 Length=271 Score = 78.8 bits (86), Expect = 2e-12 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 267 GCGAAGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 217 >seq148569 Length=573 Score = 77.0 bits (84), Expect = 5e-12 Identities = 94/123 (76%), Gaps = 4/123 (3%) Strand=Plus/Plus Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61 ||||||| ||||||| | |||||| | |||||| || | |||| | || || Sbjct 303 TACGAGAAGAACCGCATA-TTCAGAC-ATTTGGTTCATGTTCTTAGCTGATATGCCAATG 360 Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC-A 120 | |||||||||||||| |||||||| ||||||||||||||||| |||||| |||| | Sbjct 361 GTGGGAAGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCGGAATCC-TGCCTA 419 Query 121 GAA 123 ||| Sbjct 420 GAA 422 >seq65046 Length=1627 Score = 77.0 bits (84), Expect = 5e-12 Identities = 57/67 (85%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 48 CTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTC 107 |||| || || || |||||||||||||||| |||||||| ||||||||||||||||| Sbjct 1 CTGATAAGCCAATGGTGCGAAGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTC 60 Query 108 AGAATCC 114 | ||||| Sbjct 61 AAAATCC 67 >seq342606 Length=278 Score = 75.2 bits (82), Expect = 2e-11 Identities = 80/103 (78%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 12 ACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCT 71 ||||| || |||| || | |||||| || | | |||| || || || ||||||| Sbjct 1 ACCGCAGA-TTCATAA-ATTTGGTTCATGTGCTTTGCTGATAAGCCAATGATCCGAAGCT 58 Query 72 ACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||| ||| ||||||||| ||||||||||| |||||||||||| Sbjct 59 ACCACCTGATGGATTATGACTGAACGCCTCCAAGTCAGAATCC 101 >seq145044 Length=587 Score = 75.2 bits (82), Expect = 2e-11 Identities = 47/51 (92%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||| ||||| || |||||||||||||||||||||||| Sbjct 533 GCGAAGCTACCATCTGGGGGATTGTGACTGAACGCCTCTAAGTCAGAATCC 583 >seq181231 Length=834 Score = 73.4 bits (80), Expect = 6e-11 Identities = 74/95 (78%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 20 ATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTG 79 ||||||| | |||||| || || |||| ||| | || ||||||||||||||| Sbjct 321 ATTCAGAC-ATTTGGTTCATGTACTTGGCTGATCAGCTAATGGTACGAAGCTACCATCTG 379 Query 80 CTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 ||||||||| |||||| ||| ||||||||||||| Sbjct 380 ATGGATTATGACTGAACTCCTTTAAGTCAGAATCC 414 >seq60344 Length=2856 Score = 73.4 bits (80), Expect = 6e-11 Identities = 74/95 (78%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 20 ATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTG 79 ||||||| | |||||| || || |||| ||| | || ||||||||||||||| Sbjct 2343 ATTCAGAC-ATTTGGTTCATGTACTTGGCTGATCAGCTAATGGTACGAAGCTACCATCTG 2401 Query 80 CTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 ||||||||| |||||| ||| ||||||||||||| Sbjct 2402 ATGGATTATGACTGAACTCCTTTAAGTCAGAATCC 2436 >seq12289 Length=1294 Score = 73.4 bits (80), Expect = 6e-11 Identities = 87/114 (76%), Gaps = 7/114 (6%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| || || ||| ||| | |||||| || | || |||| || || | Sbjct 392 GTACGAGAGGAACTGCAGA-TTC-GAACACTTGGTTCATGTGCTTGGCTGATAAGCCAAT 449 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||||| |||||| ||||||| | | |||||||||||||||||| Sbjct 450 GGTGCGAAGCTAACATCTGAAGGATTAT---TCA--GCCTCTAAGTCAGAATCC 498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 815404361984