Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpa_20thompsoni_20[genbank_20GCA_5F001749815.1_202016-09-29] 478,281 sequences; 318,747,957 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq11110 553 5e-155 seq345888 178 4e-42 >seq11110 Length=1036 Score = 553 bits (612), Expect = 5e-155 Identities = 375/416 (90%), Gaps = 11/416 (3%) Strand=Plus/Plus Query 98 CTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCC 157 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 505 CTTCCTTAGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTC 564 Query 158 CGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAA 217 ||| ||||||| ||||||||| ||||||| | ||||||||| |||||||||||||||| Sbjct 565 CGTCACCCGTTATAACCATGGTAAGCCACTACCTTACCATCGACAGTTGATAGGGCAGAA 624 Query 218 ATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACC 277 ||||||||||| ||||||||| | ||||||||||||||| ||||||| |||||||||| Sbjct 625 ATTTGAATGAAATATCGCCGGCGCTAGGCCATGCGATTCGAAAAGTTATCATGAATCACC 684 Query 278 AAG-----GAGCCCCGAAG---GGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC-G 328 ||| ||| ||||||| || ||||||||| |||||||||||||| ||||||| | Sbjct 685 AAGAAAACGAG-CCCGAAGACTCGCATTGGTTTTTAATCTAATAAATACATCCCTTCCAG 743 Query 329 AAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGG 388 |||||||| ||||| |||||||||||||||||||||||||| | |||||||||||||| | Sbjct 744 AAGTCGGGATTTTTCGCATGTATTAGCTCTAGAATTACCACAGGTATCCATGTAGTAAAG 803 Query 389 TACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTG 448 ||| ||||||||||||||||||||||||||||||||||||||||||||| ||| | | || Sbjct 804 TACAATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTACA-AGTG 862 Query 449 CTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 863 CTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 918 Score = 122 bits (134), Expect = 3e-25 Identities = 92/107 (86%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||||| | || | | ||| ||||||| ||||| | ||||||||| Sbjct 217 GTACTCATTCCAATTACAGGGCCTCGTACGAGGCCTGTATTGTTATTTTTCGTCACTACC 276 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGG 106 |||||| | ||||| |||||||||||||||||||||||||||||||| Sbjct 277 TCCCCGAGCCGGGAATGGGTAATTTGCGCGCCTGCTGCCTTCCTTGG 323 >seq345888 Length=276 Score = 178 bits (196), Expect = 4e-42 Identities = 207/276 (75%), Gaps = 5/276 (2%) Strand=Plus/Minus Query 107 ATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCG 166 |||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||| Sbjct 276 ATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCTCCGTCACCCG 217 Query 167 TTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG 226 || ||| |||||||| || | |||| ||| |||||||||||||| || || | Sbjct 216 TTACAACCTCGGTAGGCCGATACCGTACCGACGATAGTTGATAGGGCAGTTGCTTTAAAG 157 Query 227 AACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AGGA--G 283 | ||||||| |||| || |||||| || | |||| || |||||| || | Sbjct 156 AGATGTCGCCGGTGCAAGACCGTGCGATCCGCGAGCTTATCCAGAGTCACCATCTGAACG 97 Query 284 CCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCG--AAGTCGGGGTTTT 341 ||||| || | |||| ||| |||||| | | ||| | | ||||||| | || Sbjct 96 TGCCGAAACACGGTTAGTTTTGGTCTGATAAATGCGCGCCTCCTGTCAAGTCGGCGCTTC 37 Query 342 TAGCATGTATTAGCTCTAGAATTACCACGGTTATCC 377 ||||||||||||||||||||| |||| ||||||| Sbjct 36 ACGCATGTATTAGCTCTAGAATTGCCACAGTTATCC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503176043776