Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq16669 331 3e-88 seq45707 210 7e-52 seq20944 158 4e-36 seq13160 114 4e-23 seq16668 75.2 3e-11 >seq16669 Length=5397 Score = 331 bits (366), Expect = 3e-88 Identities = 343/444 (77%), Gaps = 14/444 (3%) Strand=Plus/Minus Query 71 GGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTC 130 ||||||| |||||||||| |||||| |||||||||||||||||||||||||||||| ||| Sbjct 782 GGATTGGATAATTTGCGCACCTGCTCCCTTCCTTGGATGTGGTAGCCGTTTCTCAGCCTC 723 Query 131 CCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATC 190 |||||| ||||||||||||| |||||||||||||||| | | ||||| |||| || Sbjct 722 CCTCTCTGGAATCGAACCCTGATTCCCCGTTACCCGTAATAATCTTGGTAAGCCAATACT 663 Query 191 CTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATG 250 ||||| | || |||||||| ||||||||| | ||| | |||||||||| ||||||| Sbjct 662 TTACCAAC--AAATTGATAGGTCAGAAATTTAATCGAAACGTCGCCGGCTCTAGGCCATA 605 Query 251 CGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTT--TTTTATC 308 |||| | |||||||| || || ||| | | || || | || ||| ||| Sbjct 604 CGATCGGCAAAGTTATTCAGACTCGCCACAACGGAACTAAAAGCTCCGATTGGTTTAATC 545 Query 309 TAATAAAT-------ACACCCCTTCCGAAGT-CGGGGTTTTTAGCATGTATTAGCTCTAG 360 |||||||| | ||| || | || | ||||| ||||||||||||||||| Sbjct 544 TAATAAATGCATAAGATACCAATTGCTAAATATATCATTTTTCGCATGTATTAGCTCTAG 485 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 | || |||||||||||||||| | | ||| ||| ||||||| ||||||||| || ||| Sbjct 484 ATTTTCCACGGTTATCCATGT-GGATTTTACAATCGAATAAACTATAACTGATATACTGA 426 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||| |||||||| ||||| | || || | |||| |||||||||||||||||||||| Sbjct 425 GCCTTTCGCAGTCTCACT-TTTACTATGTATGAACTTCGACATGCATGGCTTAATCTTTG 367 Query 481 AGACAAGCATATGACTACTGGCAG 504 | || |||||||| |||||||||| Sbjct 366 AAACGAGCATATGCCTACTGGCAG 343 >seq45707 Length=1203 Score = 210 bits (232), Expect = 7e-52 Identities = 188/235 (80%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 42 GTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTC 101 |||||| | || || | ||||| | ||||||| ||||||||||||||||||||| | Sbjct 6 GTATTTCTCGTTACCATCTCCCACAATTTGGATTGGATAATTTGCGCGCCTGCTGCCTCC 65 Query 102 CTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTT 161 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 66 TTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCACGTT 125 Query 162 ACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTT 221 |||||| | | ||||| ||||||| | || || | || |||||||||||||||||| Sbjct 126 ACCCGTAATAATCTTGGTAAGCCACTAACTTAACAAC--AAATTGATAGGGCAGAAATTT 183 Query 222 GAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCAC 276 | ||| | ||||| |||| ||| ||| |||| | ||||||| || |||| Sbjct 184 AATCGAAACGTCGCCAGCTCTAGGGCATACGATCGGCAGAGTTATTCAGATTCAC 238 >seq20944 Length=1064 Score = 158 bits (174), Expect = 4e-36 Identities = 104/115 (90%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 71 GGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTC 130 ||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct 115 GGATTGGATAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCAGTTTTTCAGGCTC 56 Query 131 CCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCA 185 |||||||||||||||||||| |||||||||||||||| | | ||||| |||| Sbjct 55 CCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTAATAATCTTGGTAAGCCA 1 >seq13160 Length=4287 Score = 114 bits (126), Expect = 4e-23 Identities = 75/83 (90%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 80 AATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGG 139 |||| |||| ||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 4203 AATTACCGCGGCTGGTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTTCCTCTCCGG 4262 Query 140 AATCGAACCCTAATTCCCCGTTA 162 ||| ||||||| |||||| |||| Sbjct 4263 AATTGAACCCTGATTCCCTGTTA 4285 >seq16668 Length=1337 Score = 75.2 bits (82), Expect = 3e-11 Identities = 47/51 (92%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 454 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||| ||||||||||||||||||||||| || |||||||| |||||||||| Sbjct 3 ACTTCGACATGCATGGCTTAATCTTTGAAACGAGCATATGCCTACTGGCAG 53 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509328914944