Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq30965 203 6e-50 seq26499 183 6e-44 seq29787 129 1e-27 >seq30965 Length=529826 Score = 203 bits (224), Expect = 6e-50 Identities = 219/282 (78%), Gaps = 6/282 (2%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGTT 98 ||||||| | || ||| | || ||| | ||| | ||||||||||||||||| ||||||| Sbjct 517 TGCCCTTAATTGAGTGC-CAGGAGAGGCCGGAACGTTTACTTTGAAAAAATTGGAGTGTT 459 Query 99 CAAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTC 157 |||||||||||| || ||| | ||||||||||||| ||||||||| | |||||| Sbjct 458 CAAAGCAGGCCTCGCGCCTGAACAGCAGAGCATGGAATAATGGAATAGGACCT-CGGTTC 400 Query 158 TATTTTGTTGGTTTCTAGGAC-CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 |||| |||||||| | || || ||||||||||| ||||| | |||||| | || Sbjct 399 TATTGCGTTGGTTTTCGGAACTCGAGGTAATGATTAAGAGGGACTGACGGGGGCATTCGT 340 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| ||| ||||||||||||||||||| ||||| | | ||||||||||| || Sbjct 339 ATTGCGGTGTGAGAGGTGAAATTCTTGGATCGCCGCAAGACGACCGACTGCGAAAGCATT 280 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||| |||||||||||||||| ||||||||||||| || Sbjct 279 TGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGTTAGAGG 239 >seq26499 Length=792257 Score = 183 bits (202), Expect = 6e-44 Identities = 217/282 (77%), Gaps = 9/282 (3%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGTT 98 ||||||| | || ||| | || ||| | ||| | ||||||||||||||||| ||||||| Sbjct 255605 TGCCCTTAATTGAGTGC-CAGGAGAGGCCGGAACGTTTACTTTGAAAAAATTGGAGTGTT 255663 Query 99 CAAAGCAGGCCT-TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTC 157 |||||||||||| || ||| | ||||||||||||| ||||||||| | |||||| Sbjct 255664 CAAAGCAGGCCTCGCGCCTGAACAGCAGAGCATGGAATAATGGAATAGGACCT-CGGTTC 255722 Query 158 TATTTTGTTGGTTTCTAGGAC-CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 |||| |||||||| | || || ||||||||||| ||||| | |||||| | || Sbjct 255723 TATTGCGTTGGTTTTCGGAACTCGAGGTAATGATTAAGAGGGACTGACGGGGGCATTCGT 255782 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| ||| |||||||||||||||||| | | |||| | | |||||| |||| || Sbjct 255783 ATTGCGGTGTGAGAGGTGAAATTCTTGGA-TCGCCGCAGACGACCGACTGCG-AAGCATT 255840 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || || |||||||||||||||| ||||||||||||| || Sbjct 255841 TGCC-AGAATGTTTTCATTAATCA-AGAACGAAAGTTAGAGG 255880 >seq29787 Length=959193 Score = 129 bits (142), Expect = 1e-27 Identities = 174/236 (74%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 83 AAAAAATTAGAGTGTTCAAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGA 141 |||| ||| ||||||||||||||||||| || ||| | || |||||||||| || Sbjct 758356 AAAAGATTGGAGTGTTCAAAGCAGGCCTCACGCCTGAACAGCAGAGAATGGAATAATGGA 758415 Query 142 ATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG--TAATGATTAATAGGGA 199 ||||||| | |||| ||| || ||||| | | | | | |||||||||| |||| Sbjct 758416 ATAGGACCT-CGGTGGTATCGCGTCGGTTT-TCGAAACTCAAGTTAATGATTAAGGGGGA 758473 Query 200 TAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTA 259 | |||||| | |||| ||| | ||||||||||||||||| ||||| | Sbjct 758474 CTGACGGGGGCATTCATATTGCGGTGTGACAGGTGAAATTCTTGGATCGCCGCAAGACGA 758533 Query 260 ACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 | ||||||||||| || ||||| |||||||||||||||| ||||||||||||| Sbjct 758534 CCGACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGTTAG 758588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914908078656