Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015
-03-10] 31,897 sequences; 990,915,289 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq30965 203 6e-50
seq26499 183 6e-44
seq29787 129 1e-27
>seq30965
Length=529826
Score = 203 bits (224), Expect = 6e-50
Identities = 219/282 (78%), Gaps = 6/282 (2%)
Strand=Plus/Minus
Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGTT 98
||||||| | || ||| | || ||| | ||| | ||||||||||||||||| |||||||
Sbjct 517 TGCCCTTAATTGAGTGC-CAGGAGAGGCCGGAACGTTTACTTTGAAAAAATTGGAGTGTT 459
Query 99 CAAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTC 157
|||||||||||| || ||| | ||||||||||||| ||||||||| | ||||||
Sbjct 458 CAAAGCAGGCCTCGCGCCTGAACAGCAGAGCATGGAATAATGGAATAGGACCT-CGGTTC 400
Query 158 TATTTTGTTGGTTTCTAGGAC-CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216
|||| |||||||| | || || ||||||||||| ||||| | |||||| | ||
Sbjct 399 TATTGCGTTGGTTTTCGGAACTCGAGGTAATGATTAAGAGGGACTGACGGGGGCATTCGT 340
Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276
||| ||| ||||||||||||||||||| ||||| | | ||||||||||| ||
Sbjct 339 ATTGCGGTGTGAGAGGTGAAATTCTTGGATCGCCGCAAGACGACCGACTGCGAAAGCATT 280
Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318
||||| |||||||||||||||| ||||||||||||| ||
Sbjct 279 TGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGTTAGAGG 239
>seq26499
Length=792257
Score = 183 bits (202), Expect = 6e-44
Identities = 217/282 (77%), Gaps = 9/282 (3%)
Strand=Plus/Plus
Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGTT 98
||||||| | || ||| | || ||| | ||| | ||||||||||||||||| |||||||
Sbjct 255605 TGCCCTTAATTGAGTGC-CAGGAGAGGCCGGAACGTTTACTTTGAAAAAATTGGAGTGTT 255663
Query 99 CAAAGCAGGCCT-TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTC 157
|||||||||||| || ||| | ||||||||||||| ||||||||| | ||||||
Sbjct 255664 CAAAGCAGGCCTCGCGCCTGAACAGCAGAGCATGGAATAATGGAATAGGACCT-CGGTTC 255722
Query 158 TATTTTGTTGGTTTCTAGGAC-CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216
|||| |||||||| | || || ||||||||||| ||||| | |||||| | ||
Sbjct 255723 TATTGCGTTGGTTTTCGGAACTCGAGGTAATGATTAAGAGGGACTGACGGGGGCATTCGT 255782
Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276
||| ||| |||||||||||||||||| | | |||| | | |||||| |||| ||
Sbjct 255783 ATTGCGGTGTGAGAGGTGAAATTCTTGGA-TCGCCGCAGACGACCGACTGCG-AAGCATT 255840
Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318
|| || |||||||||||||||| ||||||||||||| ||
Sbjct 255841 TGCC-AGAATGTTTTCATTAATCA-AGAACGAAAGTTAGAGG 255880
>seq29787
Length=959193
Score = 129 bits (142), Expect = 1e-27
Identities = 174/236 (74%), Gaps = 6/236 (3%)
Strand=Plus/Plus
Query 83 AAAAAATTAGAGTGTTCAAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGA 141
|||| ||| ||||||||||||||||||| || ||| | || |||||||||| ||
Sbjct 758356 AAAAGATTGGAGTGTTCAAAGCAGGCCTCACGCCTGAACAGCAGAGAATGGAATAATGGA 758415
Query 142 ATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG--TAATGATTAATAGGGA 199
||||||| | |||| ||| || ||||| | | | | | |||||||||| ||||
Sbjct 758416 ATAGGACCT-CGGTGGTATCGCGTCGGTTT-TCGAAACTCAAGTTAATGATTAAGGGGGA 758473
Query 200 TAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTA 259
| |||||| | |||| ||| | ||||||||||||||||| ||||| |
Sbjct 758474 CTGACGGGGGCATTCATATTGCGGTGTGACAGGTGAAATTCTTGGATCGCCGCAAGACGA 758533
Query 260 ACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315
| ||||||||||| || ||||| |||||||||||||||| |||||||||||||
Sbjct 758534 CCGACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGTTAG 758588
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 914908078656
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |