Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq27054 158 5e-36 seq26499 158 5e-36 seq15573 158 5e-36 seq2959 158 5e-36 seq12201 78.8 4e-12 >seq27054 Length=836358 Score = 158 bits (174), Expect = 5e-36 Identities = 104/115 (90%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||| Sbjct 8169 GGACCCGAAAGATGGTGAACTATGCCCGAGCAGGATGAAGCCAGAGGAAACTCTGGTGGA 8110 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||||||| ||||| ||||||||||||||||| | |||||||||||||||| Sbjct 8109 GGTCCGCAGCGATTCTGACGTGCAAATCGATCGTCCGACTTGGGTATAGGGGCGA 8055 >seq26499 Length=792257 Score = 158 bits (174), Expect = 5e-36 Identities = 104/115 (90%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||| Sbjct 258724 GGACCCGAAAGATGGTGAACTATGCCCGAGCAGGATGAAGCCAGAGGAAACTCTGGTGGA 258783 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||||||| ||||| ||||||||||||||||| | |||||||||||||||| Sbjct 258784 GGTCCGCAGCGATTCTGACGTGCAAATCGATCGTCCGACTTGGGTATAGGGGCGA 258838 Score = 122 bits (134), Expect = 4e-25 Identities = 114/144 (79%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAA-ATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| || |||| ||||||| || | || | ||||||| || | |||| || |||||| Sbjct 257953 GAGTCGGGTAGTTTTGGAATGCTGCCCAAAGAAGGGAGGTGAACTCCTTCCAAGGCTAAA 258012 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || |||| |||||||||||| ||||||| |||| ||||| ||||||| ||| || | Sbjct 258013 TACTGGCACGAGACCGATAGCAGACAAGTACCGTGAGGGAAAGTTGAAAAGAACTCTGAA 258072 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 258073 GAGAGAGTTCAAGAGGACGTGAAA 258096 >seq15573 Length=490 Score = 158 bits (174), Expect = 5e-36 Identities = 104/115 (90%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||| Sbjct 424 GGACCCGAAAGATGGTGAACTATGCCCGAGCAGGATGAAGCCAGAGGAAACTCTGGTGGA 365 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||||||| ||||| ||||||||||||||||| | |||||||||||||||| Sbjct 364 GGTCCGCAGCGATTCTGACGTGCAAATCGATCGTCCGACTTGGGTATAGGGGCGA 310 >seq2959 Length=164602 Score = 158 bits (174), Expect = 5e-36 Identities = 104/115 (90%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||| Sbjct 45372 GGACCCGAAAGATGGTGAACTATGCCCGAGCAGGATGAAGCCAGAGGAAACTCTGGTGGA 45431 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||||||| ||||| ||||||||||||||||| | |||||||||||||||| Sbjct 45432 GGTCCGCAGCGATTCTGACGTGCAAATCGATCGTCCGACTTGGGTATAGGGGCGA 45486 >seq12201 Length=155965 Score = 78.8 bits (86), Expect = 4e-12 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 612 GAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTT 669 ||||||||||||||||||| ||||||| ||||| ||||||||||||||||| || || Sbjct 90246 GAGGAAACTCTGGTGGAGGTCCGCAGCGATTCTGACGTGCAAATCGATCGTCCAACTT 90189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079315809350