Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015
-03-10] 31,897 sequences; 990,915,289 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq27054 158 5e-36
seq26499 158 5e-36
seq15573 158 5e-36
seq2959 158 5e-36
seq12201 78.8 4e-12
>seq27054
Length=836358
Score = 158 bits (174), Expect = 5e-36
Identities = 104/115 (90%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628
|||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||
Sbjct 8169 GGACCCGAAAGATGGTGAACTATGCCCGAGCAGGATGAAGCCAGAGGAAACTCTGGTGGA 8110
Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|| ||||||| ||||| ||||||||||||||||| | ||||||||||||||||
Sbjct 8109 GGTCCGCAGCGATTCTGACGTGCAAATCGATCGTCCGACTTGGGTATAGGGGCGA 8055
>seq26499
Length=792257
Score = 158 bits (174), Expect = 5e-36
Identities = 104/115 (90%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628
|||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||
Sbjct 258724 GGACCCGAAAGATGGTGAACTATGCCCGAGCAGGATGAAGCCAGAGGAAACTCTGGTGGA 258783
Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|| ||||||| ||||| ||||||||||||||||| | ||||||||||||||||
Sbjct 258784 GGTCCGCAGCGATTCTGACGTGCAAATCGATCGTCCGACTTGGGTATAGGGGCGA 258838
Score = 122 bits (134), Expect = 4e-25
Identities = 114/144 (79%), Gaps = 1/144 (1%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAA-ATGGGAGGTAAATTTCTTCTAAAGCTAAA 98
|||||| || |||| ||||||| || | || | ||||||| || | |||| || ||||||
Sbjct 257953 GAGTCGGGTAGTTTTGGAATGCTGCCCAAAGAAGGGAGGTGAACTCCTTCCAAGGCTAAA 258012
Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158
|| |||| |||||||||||| ||||||| |||| ||||| ||||||| ||| || |
Sbjct 258013 TACTGGCACGAGACCGATAGCAGACAAGTACCGTGAGGGAAAGTTGAAAAGAACTCTGAA 258072
Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182
|||||||| || || ||||||||
Sbjct 258073 GAGAGAGTTCAAGAGGACGTGAAA 258096
>seq15573
Length=490
Score = 158 bits (174), Expect = 5e-36
Identities = 104/115 (90%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628
|||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||
Sbjct 424 GGACCCGAAAGATGGTGAACTATGCCCGAGCAGGATGAAGCCAGAGGAAACTCTGGTGGA 365
Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|| ||||||| ||||| ||||||||||||||||| | ||||||||||||||||
Sbjct 364 GGTCCGCAGCGATTCTGACGTGCAAATCGATCGTCCGACTTGGGTATAGGGGCGA 310
>seq2959
Length=164602
Score = 158 bits (174), Expect = 5e-36
Identities = 104/115 (90%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628
|||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||
Sbjct 45372 GGACCCGAAAGATGGTGAACTATGCCCGAGCAGGATGAAGCCAGAGGAAACTCTGGTGGA 45431
Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|| ||||||| ||||| ||||||||||||||||| | ||||||||||||||||
Sbjct 45432 GGTCCGCAGCGATTCTGACGTGCAAATCGATCGTCCGACTTGGGTATAGGGGCGA 45486
>seq12201
Length=155965
Score = 78.8 bits (86), Expect = 4e-12
Identities = 52/58 (90%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 612 GAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTT 669
||||||||||||||||||| ||||||| ||||| ||||||||||||||||| || ||
Sbjct 90246 GAGGAAACTCTGGTGGAGGTCCGCAGCGATTCTGACGTGCAAATCGATCGTCCAACTT 90189
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079315809350
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |