Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015
-03-10] 31,897 sequences; 990,915,289 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq26499 383 3e-104
seq24832 100 5e-19
seq21333 96.9 6e-18
seq22556 86.0 1e-14
>seq26499
Length=792257
Score = 383 bits (424), Expect = 3e-104
Identities = 262/294 (89%), Gaps = 1/294 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGT-CATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| ||||| || | | | | || | ||||||||||||||||||||||||||||
Sbjct 261075 TACTGAGCAGAATTGCCGTAGCGACAACCTTTCATCAGTAGGGTAAAACTAACCTGTCTC 261016
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 261015 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGTG 260956
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260955 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 260896
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
|||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct 260895 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCCCTTGCG 260836
Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
|| || | ||| || | |||||||||||||||||| |||||| ||| |||||||
Sbjct 260835 TCGAACTCCGACGGTCAAAAGGATCGATAGGCCACGCTTTCACGGTCTGTATTC 260782
>seq24832
Length=656298
Score = 100 bits (110), Expect = 5e-19
Identities = 58/60 (97%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 166 AAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTC 225
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 64460 AAGCAATGTCGCTATGAACGCTTGACTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTC 64519
>seq21333
Length=862227
Score = 96.9 bits (106), Expect = 6e-18
Identities = 73/86 (85%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 208 TCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGAT 267
|||||||||||||||||||| |||| || || || || | ||| || | |||||||||||
Sbjct 369862 TCCCTGTGGTAACTTTTCTGACACCCCTTGCGTCGAACTCCGACGGTCAAAAGGATCGAT 369803
Query 268 AGGCCACACTTTCATGGTTTGTATTC 293
||||||| |||||| ||| |||||||
Sbjct 369802 AGGCCACGCTTTCACGGTCTGTATTC 369777
>seq22556
Length=370666
Score = 86.0 bits (94), Expect = 1e-14
Identities = 49/50 (98%), Gaps = 0/50 (0%)
Strand=Plus/Minus
Query 155 GAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAG 204
|||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 238782 GAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCATAAGCCAG 238733
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854127472032
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |