Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq26499 383 3e-104 seq24832 100 5e-19 seq21333 96.9 6e-18 seq22556 86.0 1e-14 >seq26499 Length=792257 Score = 383 bits (424), Expect = 3e-104 Identities = 262/294 (89%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGT-CATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| ||||| || | | | | || | |||||||||||||||||||||||||||| Sbjct 261075 TACTGAGCAGAATTGCCGTAGCGACAACCTTTCATCAGTAGGGTAAAACTAACCTGTCTC 261016 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct 261015 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGTG 260956 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 260955 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 260896 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||||||||||||||||||||||||||||||||||||||| |||| || || Sbjct 260895 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCCCTTGCG 260836 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 || || | ||| || | |||||||||||||||||| |||||| ||| ||||||| Sbjct 260835 TCGAACTCCGACGGTCAAAAGGATCGATAGGCCACGCTTTCACGGTCTGTATTC 260782 >seq24832 Length=656298 Score = 100 bits (110), Expect = 5e-19 Identities = 58/60 (97%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 166 AAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTC 225 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 64460 AAGCAATGTCGCTATGAACGCTTGACTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTC 64519 >seq21333 Length=862227 Score = 96.9 bits (106), Expect = 6e-18 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 208 TCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGAT 267 |||||||||||||||||||| |||| || || || || | ||| || | ||||||||||| Sbjct 369862 TCCCTGTGGTAACTTTTCTGACACCCCTTGCGTCGAACTCCGACGGTCAAAAGGATCGAT 369803 Query 268 AGGCCACACTTTCATGGTTTGTATTC 293 ||||||| |||||| ||| ||||||| Sbjct 369802 AGGCCACGCTTTCACGGTCTGTATTC 369777 >seq22556 Length=370666 Score = 86.0 bits (94), Expect = 1e-14 Identities = 49/50 (98%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 155 GAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAG 204 |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 238782 GAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCATAAGCCAG 238733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854127472032