Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq30965 96.9 4e-18 seq26499 96.9 4e-18 seq11224 73.4 5e-11 >seq30965 Length=529826 Score = 96.9 bits (106), Expect = 4e-18 Identities = 139/190 (73%), Gaps = 7/190 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 |||||||| ||||| || | ||||||||| ||||||||||||| | ||| |||| Sbjct 386 AAACCAACGCAATAGAACCG-AGGTCCTATTCCATTATTCCATGCTCTGCTGTTCAGGCG 444 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128 || |||||||||||||||| |||||| |||| ||||| || | || |||| ||| Sbjct 445 CGAGGCCTGCTTTGAACACTCCAATTTTTTCAAAGTAAACGTTCCGGCCTCTCCTGGCAC 504 Query 129 -CAATGAAGGCATACGGGC--TCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCCGT 185 |||| |||| ||||| ||| ||||| ||| | || | |||||||| |||| Sbjct 505 TCAATTAAGGGCACCGGGCGAAAACCGAGAGGAAGGCCAGG--ACTGCAGTACACGCCTC 562 Query 186 GAGGCGGACC 195 |||||||| Sbjct 563 ACGGCGGACC 572 >seq26499 Length=792257 Score = 96.9 bits (106), Expect = 4e-18 Identities = 139/190 (73%), Gaps = 7/190 (4%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 |||||||| ||||| || | ||||||||| ||||||||||||| | ||| |||| Sbjct 255736 AAACCAACGCAATAGAACCG-AGGTCCTATTCCATTATTCCATGCTCTGCTGTTCAGGCG 255678 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128 || |||||||||||||||| |||||| |||| ||||| || | || |||| ||| Sbjct 255677 CGAGGCCTGCTTTGAACACTCCAATTTTTTCAAAGTAAACGTTCCGGCCTCTCCTGGCAC 255618 Query 129 -CAATGAAGGCATACGGGC--TCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCCGT 185 |||| |||| ||||| ||| ||||| ||| | || | |||||||| |||| Sbjct 255617 TCAATTAAGGGCACCGGGCGAAAACCGAGAGGAAGGCCAGG--ACTGCAGTACACGCCTC 255560 Query 186 GAGGCGGACC 195 |||||||| Sbjct 255559 ACGGCGGACC 255550 >seq11224 Length=590200 Score = 73.4 bits (80), Expect = 5e-11 Identities = 115/160 (72%), Gaps = 6/160 (4%) Strand=Plus/Plus Query 40 TCTATTATTCCATGCTAATGTATTCGGGCGTAAG-CCTGCTTTGAACACTCTAATTTTCT 98 || || |||||||||| | ||| |||| || |||||||||||||||| |||||| | Sbjct 475945 TCCATAATTCCATGCTCTGCTGTTCAGGCGCGAGGCCTGCTTTGAACACTCCAATTTTTT 476004 Query 99 CAAGGTAAAAGTCCTGGTTCCTCCGCACAC-CAATGAAGGCATACGGGC--TCACCAAGA 155 ||| ||||| || | || |||| ||| |||| |||| ||||| ||| ||| Sbjct 476005 CAAAGTAAACGTTCCGGCCTCTCCTAGCACTCAATTAAGGGCACCGGGCGAAAACCGAGA 476064 Query 156 GGTAGGGCTGGGTAATGCAGTACTCGCCGTGAGGCGGACC 195 || ||| | || | |||||||| |||| |||||||| Sbjct 476065 GGAAGGCCAGG--ACTGCAGTACACGCCTCACGGCGGACC 476102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595016081898