Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015
-03-10] 31,897 sequences; 990,915,289 total letters
Query= AAMG01001634.1
Length=217
Score E
Sequences producing significant alignments: (Bits) Value
seq30965 96.9 4e-18
seq26499 96.9 4e-18
seq11224 73.4 5e-11
>seq30965
Length=529826
Score = 96.9 bits (106), Expect = 4e-18
Identities = 139/190 (73%), Gaps = 7/190 (4%)
Strand=Plus/Plus
Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69
|||||||| ||||| || | ||||||||| ||||||||||||| | ||| ||||
Sbjct 386 AAACCAACGCAATAGAACCG-AGGTCCTATTCCATTATTCCATGCTCTGCTGTTCAGGCG 444
Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128
|| |||||||||||||||| |||||| |||| ||||| || | || |||| |||
Sbjct 445 CGAGGCCTGCTTTGAACACTCCAATTTTTTCAAAGTAAACGTTCCGGCCTCTCCTGGCAC 504
Query 129 -CAATGAAGGCATACGGGC--TCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCCGT 185
|||| |||| ||||| ||| ||||| ||| | || | |||||||| ||||
Sbjct 505 TCAATTAAGGGCACCGGGCGAAAACCGAGAGGAAGGCCAGG--ACTGCAGTACACGCCTC 562
Query 186 GAGGCGGACC 195
||||||||
Sbjct 563 ACGGCGGACC 572
>seq26499
Length=792257
Score = 96.9 bits (106), Expect = 4e-18
Identities = 139/190 (73%), Gaps = 7/190 (4%)
Strand=Plus/Minus
Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69
|||||||| ||||| || | ||||||||| ||||||||||||| | ||| ||||
Sbjct 255736 AAACCAACGCAATAGAACCG-AGGTCCTATTCCATTATTCCATGCTCTGCTGTTCAGGCG 255678
Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128
|| |||||||||||||||| |||||| |||| ||||| || | || |||| |||
Sbjct 255677 CGAGGCCTGCTTTGAACACTCCAATTTTTTCAAAGTAAACGTTCCGGCCTCTCCTGGCAC 255618
Query 129 -CAATGAAGGCATACGGGC--TCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCCGT 185
|||| |||| ||||| ||| ||||| ||| | || | |||||||| ||||
Sbjct 255617 TCAATTAAGGGCACCGGGCGAAAACCGAGAGGAAGGCCAGG--ACTGCAGTACACGCCTC 255560
Query 186 GAGGCGGACC 195
||||||||
Sbjct 255559 ACGGCGGACC 255550
>seq11224
Length=590200
Score = 73.4 bits (80), Expect = 5e-11
Identities = 115/160 (72%), Gaps = 6/160 (4%)
Strand=Plus/Plus
Query 40 TCTATTATTCCATGCTAATGTATTCGGGCGTAAG-CCTGCTTTGAACACTCTAATTTTCT 98
|| || |||||||||| | ||| |||| || |||||||||||||||| |||||| |
Sbjct 475945 TCCATAATTCCATGCTCTGCTGTTCAGGCGCGAGGCCTGCTTTGAACACTCCAATTTTTT 476004
Query 99 CAAGGTAAAAGTCCTGGTTCCTCCGCACAC-CAATGAAGGCATACGGGC--TCACCAAGA 155
||| ||||| || | || |||| ||| |||| |||| ||||| ||| |||
Sbjct 476005 CAAAGTAAACGTTCCGGCCTCTCCTAGCACTCAATTAAGGGCACCGGGCGAAAACCGAGA 476064
Query 156 GGTAGGGCTGGGTAATGCAGTACTCGCCGTGAGGCGGACC 195
|| ||| | || | |||||||| |||| ||||||||
Sbjct 476065 GGAAGGCCAGG--ACTGCAGTACACGCCTCACGGCGGACC 476102
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595016081898
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |