Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq26499 600 4e-169 seq10623 183 1e-43 seq8890 163 9e-38 seq2131 163 9e-38 seq26421 152 2e-34 seq3670 118 3e-24 seq11957 116 1e-23 seq20222 107 6e-21 seq10057 107 6e-21 seq18733 104 8e-20 seq1227 100 9e-19 seq31342 96.9 1e-17 seq27009 93.3 1e-16 seq26366 93.3 1e-16 >seq26499 Length=792257 Score = 600 bits (664), Expect = 4e-169 Identities = 461/543 (85%), Gaps = 18/543 (3%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| |||| || ||| |||| | ||||||||||||||||||| Sbjct 260748 CTTTTGCTCTACGCGAGGTTTCCGTCCTCGCTGAGCTCGCCTTAGGACACCTGCGTTACC 260689 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||| ||||||||| |||||||||| |||||| |||| || ||| || Sbjct 260688 ATTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACGCTGTCTTCGGAGCGGGTC 260629 Query 127 GG-----CCCGCGAAGGAC----CTTAACGCCAGAAAATGGTCG----GT--GAAGACCA 171 | |||| || || |||| | ||||||| || || || ||| || Sbjct 260628 GCGGCCCCCCGTGAGGGCGGCCGCTTAGCACCAGAAATCGGACGAACCGTCGGAACGCCC 260569 Query 172 GTT--CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCC 229 ||| ||| ||| || |||||||| ||||||| || ||||||||||||||| || Sbjct 260568 GTTTCCCGACTCACCGAATAAGTAAAGAAACGATGAGAGTAGTGGTATTTCACCGTCGGT 260509 Query 230 GAAA-CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTC 288 | || | ||||||| ||| ||||||| |||| ||| ||||||| ||| |||||||||| Sbjct 260508 GCAAGCACCTCCCACCTATCCTACACCCCTCATGTCTCTTCACAAGGTCAGACTAGAGTC 260449 Query 289 AAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGT 348 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 260448 AAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGT 260389 Query 349 TTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTA 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 260388 TTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTA 260329 Query 409 ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCC 468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 260328 ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCC 260269 Query 469 GCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGT 528 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 260268 GCGCTTCGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGT 260209 Query 529 CAA 531 ||| Sbjct 260208 CAA 260206 >seq10623 Length=147711 Score = 183 bits (202), Expect = 1e-43 Identities = 104/106 (98%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 283 AGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGC 342 ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 17090 AGAATCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGC 17031 Query 343 TGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAA 388 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17030 TGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAA 16985 >seq8890 Length=1784703 Score = 163 bits (180), Expect = 9e-38 Identities = 93/95 (98%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 71603 GAATAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCT 71662 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 373 ||||||||||||||||||||||||||||||||||| Sbjct 71663 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 71697 >seq2131 Length=871 Score = 163 bits (180), Expect = 9e-38 Identities = 93/95 (98%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 114 GAATAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCT 173 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 373 ||||||||||||||||||||||||||||||||||| Sbjct 174 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 208 >seq26421 Length=574133 Score = 152 bits (168), Expect = 2e-34 Identities = 87/89 (98%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 500553 GAATAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCT 500612 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAG 367 ||||||||||||||||||||||||||||| Sbjct 500613 TGGCTGTGGTTTCGCTAGATAGTAGATAG 500641 >seq3670 Length=813617 Score = 118 bits (130), Expect = 3e-24 Identities = 68/70 (97%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 320 TCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAA 379 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 699449 TCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAA 699508 Query 380 TCTCGTTAAT 389 ||||||| || Sbjct 699509 TCTCGTTCAT 699518 >seq11957 Length=125851 Score = 116 bits (128), Expect = 1e-23 Identities = 69/72 (96%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 || ||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 62683 GAATAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGAATCTGCCAAGCCCGTTCCCT 62742 Query 339 TGGCTGTGGTTT 350 |||||||||||| Sbjct 62743 TGGCTGTGGTTT 62754 >seq20222 Length=645380 Score = 107 bits (118), Expect = 6e-21 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 287 TCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTG 346 |||||||||||| ||||||||||||| |||||||| ||||||||| |||||||||||||| Sbjct 543896 TCAAGCTCAACATGGTCTTCTTTCCCTGCTGATTCTGCCAAGCCCTTTCCCTTGGCTGTG 543955 Query 347 GTTTCGCTAGAT 358 |||||||| ||| Sbjct 543956 GTTTCGCTTGAT 543967 >seq10057 Length=122332 Score = 107 bits (118), Expect = 6e-21 Identities = 61/62 (98%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 289 AAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGT 348 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 108720 AAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGT 108779 Query 349 TT 350 || Sbjct 108780 TT 108781 >seq18733 Length=89072 Score = 104 bits (114), Expect = 8e-20 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| |||| || ||| |||| | ||||||||||||||||||| Sbjct 68845 CTTTTGCTCTACGCGAGGTTTCCGTCCTCGCTGAGCTCGCCTTAGGACACCTGCGTTACC 68786 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116 ||| |||||||| ||||||||| ||||||||| |||||| |||| || Sbjct 68785 ATTTGACAGATGTACCGCCCCAGTCAAACTCCCACCCTGACGCTGTCTTC 68736 >seq1227 Length=416768 Score = 100 bits (110), Expect = 9e-19 Identities = 58/60 (97%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 285 AGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTG 344 ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct 336711 AGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCCAGCCCGTTCCCTTGGCTG 336652 >seq31342 Length=926010 Score = 96.9 bits (106), Expect = 1e-17 Identities = 61/66 (92%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCT 343 ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||| Sbjct 132122 GAGTCAAGCTCAACAGGGTCTTCTTTCCCTGCTGATTCTGCCAAGCCTACTCCCTTGGCT 132181 Query 344 GTGGTT 349 |||||| Sbjct 132182 GTGGTT 132187 >seq27009 Length=1082370 Score = 93.3 bits (102), Expect = 1e-16 Identities = 51/51 (100%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 481 ATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 782968 ATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 782918 Score = 75.2 bits (82), Expect = 4e-11 Identities = 41/41 (100%), Gaps = 0/41 (0%) Strand=Plus/Minus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||||||||||||||||||||||||||||||||||| Sbjct 776042 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 776002 >seq26366 Length=605007 Score = 93.3 bits (102), Expect = 1e-16 Identities = 53/54 (98%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA 420 ||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 137871 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGATGA 137818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634678420256