Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015
-03-10] 31,897 sequences; 990,915,289 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq26499 600 4e-169
seq10623 183 1e-43
seq8890 163 9e-38
seq2131 163 9e-38
seq26421 152 2e-34
seq3670 118 3e-24
seq11957 116 1e-23
seq20222 107 6e-21
seq10057 107 6e-21
seq18733 104 8e-20
seq1227 100 9e-19
seq31342 96.9 1e-17
seq27009 93.3 1e-16
seq26366 93.3 1e-16
>seq26499
Length=792257
Score = 600 bits (664), Expect = 4e-169
Identities = 461/543 (85%), Gaps = 18/543 (3%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||||||||| ||| |||| || ||| |||| | |||||||||||||||||||
Sbjct 260748 CTTTTGCTCTACGCGAGGTTTCCGTCCTCGCTGAGCTCGCCTTAGGACACCTGCGTTACC 260689
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||| |||||||| ||||||||| |||||||||| |||||| |||| || ||| ||
Sbjct 260688 ATTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACGCTGTCTTCGGAGCGGGTC 260629
Query 127 GG-----CCCGCGAAGGAC----CTTAACGCCAGAAAATGGTCG----GT--GAAGACCA 171
| |||| || || |||| | ||||||| || || || ||| ||
Sbjct 260628 GCGGCCCCCCGTGAGGGCGGCCGCTTAGCACCAGAAATCGGACGAACCGTCGGAACGCCC 260569
Query 172 GTT--CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCC 229
||| ||| ||| || |||||||| ||||||| || ||||||||||||||| ||
Sbjct 260568 GTTTCCCGACTCACCGAATAAGTAAAGAAACGATGAGAGTAGTGGTATTTCACCGTCGGT 260509
Query 230 GAAA-CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTC 288
| || | ||||||| ||| ||||||| |||| ||| ||||||| ||| ||||||||||
Sbjct 260508 GCAAGCACCTCCCACCTATCCTACACCCCTCATGTCTCTTCACAAGGTCAGACTAGAGTC 260449
Query 289 AAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGT 348
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 260448 AAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGT 260389
Query 349 TTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTA 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260388 TTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTA 260329
Query 409 ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCC 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260328 ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCC 260269
Query 469 GCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGT 528
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260268 GCGCTTCGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGT 260209
Query 529 CAA 531
|||
Sbjct 260208 CAA 260206
>seq10623
Length=147711
Score = 183 bits (202), Expect = 1e-43
Identities = 104/106 (98%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 283 AGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGC 342
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 17090 AGAATCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGC 17031
Query 343 TGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAA 388
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 17030 TGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAA 16985
>seq8890
Length=1784703
Score = 163 bits (180), Expect = 9e-38
Identities = 93/95 (98%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 71603 GAATAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCT 71662
Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 373
|||||||||||||||||||||||||||||||||||
Sbjct 71663 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 71697
>seq2131
Length=871
Score = 163 bits (180), Expect = 9e-38
Identities = 93/95 (98%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 114 GAATAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCT 173
Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 373
|||||||||||||||||||||||||||||||||||
Sbjct 174 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 208
>seq26421
Length=574133
Score = 152 bits (168), Expect = 2e-34
Identities = 87/89 (98%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 500553 GAATAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCT 500612
Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAG 367
|||||||||||||||||||||||||||||
Sbjct 500613 TGGCTGTGGTTTCGCTAGATAGTAGATAG 500641
>seq3670
Length=813617
Score = 118 bits (130), Expect = 3e-24
Identities = 68/70 (97%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 320 TCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAA 379
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699449 TCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAA 699508
Query 380 TCTCGTTAAT 389
||||||| ||
Sbjct 699509 TCTCGTTCAT 699518
>seq11957
Length=125851
Score = 116 bits (128), Expect = 1e-23
Identities = 69/72 (96%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338
|| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 62683 GAATAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGAATCTGCCAAGCCCGTTCCCT 62742
Query 339 TGGCTGTGGTTT 350
||||||||||||
Sbjct 62743 TGGCTGTGGTTT 62754
>seq20222
Length=645380
Score = 107 bits (118), Expect = 6e-21
Identities = 67/72 (93%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 287 TCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTG 346
|||||||||||| ||||||||||||| |||||||| ||||||||| ||||||||||||||
Sbjct 543896 TCAAGCTCAACATGGTCTTCTTTCCCTGCTGATTCTGCCAAGCCCTTTCCCTTGGCTGTG 543955
Query 347 GTTTCGCTAGAT 358
|||||||| |||
Sbjct 543956 GTTTCGCTTGAT 543967
>seq10057
Length=122332
Score = 107 bits (118), Expect = 6e-21
Identities = 61/62 (98%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 289 AAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGT 348
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 108720 AAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGT 108779
Query 349 TT 350
||
Sbjct 108780 TT 108781
>seq18733
Length=89072
Score = 104 bits (114), Expect = 8e-20
Identities = 89/110 (81%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||||||||| ||| |||| || ||| |||| | |||||||||||||||||||
Sbjct 68845 CTTTTGCTCTACGCGAGGTTTCCGTCCTCGCTGAGCTCGCCTTAGGACACCTGCGTTACC 68786
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116
||| |||||||| ||||||||| ||||||||| |||||| |||| ||
Sbjct 68785 ATTTGACAGATGTACCGCCCCAGTCAAACTCCCACCCTGACGCTGTCTTC 68736
>seq1227
Length=416768
Score = 100 bits (110), Expect = 9e-19
Identities = 58/60 (97%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 285 AGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTG 344
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 336711 AGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCCAGCCCGTTCCCTTGGCTG 336652
>seq31342
Length=926010
Score = 96.9 bits (106), Expect = 1e-17
Identities = 61/66 (92%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCT 343
||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||
Sbjct 132122 GAGTCAAGCTCAACAGGGTCTTCTTTCCCTGCTGATTCTGCCAAGCCTACTCCCTTGGCT 132181
Query 344 GTGGTT 349
||||||
Sbjct 132182 GTGGTT 132187
>seq27009
Length=1082370
Score = 93.3 bits (102), Expect = 1e-16
Identities = 51/51 (100%), Gaps = 0/51 (0%)
Strand=Plus/Minus
Query 481 ATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782968 ATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 782918
Score = 75.2 bits (82), Expect = 4e-11
Identities = 41/41 (100%), Gaps = 0/41 (0%)
Strand=Plus/Minus
Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474
|||||||||||||||||||||||||||||||||||||||||
Sbjct 776042 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 776002
>seq26366
Length=605007
Score = 93.3 bits (102), Expect = 1e-16
Identities = 53/54 (98%), Gaps = 0/54 (0%)
Strand=Plus/Minus
Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 137871 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGATGA 137818
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1634678420256
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |