Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq26499 497 3e-138 seq5480 497 3e-138 seq30965 491 1e-136 >seq26499 Length=792257 Score = 497 bits (550), Expect = 3e-138 Identities = 428/517 (83%), Gaps = 16/517 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||| Sbjct 255414 GTACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACC 255355 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 255354 TCCCCGTGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 255295 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||| Sbjct 255294 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCTCCGTTACCCGTGACGACCATGGT 255235 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| || | ||||||||||||||||||||||||| ||| ||| || || ||||||| Sbjct 255234 AGGCGCATAACGTACCATCGAAAGTTGATAGGGCAGACATTCGAAGGATCCGTCGCCGGT 255175 Query 240 TC-AAGGCCATGCGATTCGTTAAGTTATTATGA-ATCACCAAGGAGCC---CCGA-AGGG 293 | ||| || |||||| | | ||||| || |||||| | | | |||| | | Sbjct 255174 GCAAAGACCGTGCGATCGGCTGTGTTATCCAGAGTTCACCAGTGTGGCCGGCCGAGACCG 255115 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCCG--AAGTCGGGGTTTTTA-GCATGTA 350 | |||| || | |||||||| ||| ||||| | ||||||| | || | ||||||| Sbjct 255114 GGCTGGTCTTGTTCCTAATAAAAGCACGCCTTCTGGAAAGTCGGCGCTTGGACGCATGTA 255055 Query 351 TTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACT--ATCAAATAAACGATAA 408 ||||||||||||||||||| ||||||||||| | || ||| ||| ||| ||| |||| Sbjct 255054 TTAGCTCTAGAATTACCACAGTTATCCATGTCG-GGGGGACTCGATCCAATGAACCATAA 254996 Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATA-GATTGCTTATACTTAGACATGCAT 467 ||||||||||||||||| ||||||||| || | | || |||| ||||||||||||||| Sbjct 254995 CTGATTTAATGAGCCATCCGCAGTTTCGCTCGAGACGA--GCTTGTACTTAGACATGCAT 254938 Query 468 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||| Sbjct 254937 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 254901 >seq5480 Length=169542 Score = 497 bits (550), Expect = 3e-138 Identities = 428/517 (83%), Gaps = 16/517 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||| Sbjct 14359 GTACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACC 14418 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14419 TCCCCGTGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 14478 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||| Sbjct 14479 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCTCCGTTACCCGTGACGACCATGGT 14538 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| || | ||||||||||||||||||||||||| ||| ||| || || ||||||| Sbjct 14539 AGGCGCATAACGTACCATCGAAAGTTGATAGGGCAGACATTCGAAGGATCCGTCGCCGGT 14598 Query 240 TC-AAGGCCATGCGATTCGTTAAGTTATTATGA-ATCACCAAGGAGCC---CCGA-AGGG 293 | ||| || |||||| | | ||||| || |||||| | | | |||| | | Sbjct 14599 GCAAAGACCGTGCGATCGGCTGTGTTATCCAGAGTTCACCAGTGTGGCCGGCCGAGACCG 14658 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCCG--AAGTCGGGGTTTTTA-GCATGTA 350 | |||| || | |||||||| ||| ||||| | ||||||| | || | ||||||| Sbjct 14659 GGCTGGTCTTGTTCCTAATAAAAGCACGCCTTCTGGAAAGTCGGCGCTTGGACGCATGTA 14718 Query 351 TTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACT--ATCAAATAAACGATAA 408 ||||||||||||||||||| ||||||||||| | || ||| ||| ||| ||| |||| Sbjct 14719 TTAGCTCTAGAATTACCACAGTTATCCATGTCG-GGGGGACTCGATCCAATGAACCATAA 14777 Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATA-GATTGCTTATACTTAGACATGCAT 467 ||||||||||||||||| ||||||||| || | | || |||| ||||||||||||||| Sbjct 14778 CTGATTTAATGAGCCATCCGCAGTTTCGCTCGAGACGA--GCTTGTACTTAGACATGCAT 14835 Query 468 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||| Sbjct 14836 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 14872 >seq30965 Length=529826 Score = 491 bits (544), Expect = 1e-136 Identities = 427/517 (83%), Gaps = 16/517 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||| Sbjct 708 GTACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACC 767 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 768 TCCCCGTGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 827 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||| Sbjct 828 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCTCCGTTACCCGTGACGACCATGGT 887 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| || | ||||||||||||||||||||||||| ||| ||| || || ||||||| Sbjct 888 AGGCGCATAACGTACCATCGAAAGTTGATAGGGCAGACATTCGAAGGATCCGTCGCCGGT 947 Query 240 TC-AAGGCCATGCGATTCGTTAAGTTATTATGA-ATCACCAAGGAGCC---CCGA-AGGG 293 | ||| || |||||| | | ||||| || |||||| | | | |||| | | Sbjct 948 GCAAAGACCGTGCGATCGGCTGTGTTATCCAGAGTTCACCAGTGTGGCCGGCCGAGACCG 1007 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCCG--AAGTCGGGGTTTTTA-GCATGTA 350 | |||| || | |||||||| ||| ||||| | ||||||| | || | ||||||| Sbjct 1008 GGCTGGTCTTGTTCCTAATAAAAGCACGCCTTCTGGAAAGTCGGCGCTTGGACGCATGTA 1067 Query 351 TTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACT--ATCAAATAAACGATAA 408 ||||||||||||||||||| ||||||||||| | || ||| ||| ||| ||| |||| Sbjct 1068 TTAGCTCTAGAATTACCACAGTTATCCATGTCG-GGGGGACTCGATCCAATGAACCATAA 1126 Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACT-GTATAGATTGCTTATACTTAGACATGCAT 467 ||||||||||||||||| ||||||||| || | || |||| ||||||||||||||| Sbjct 1127 CTGATTTAATGAGCCATCCGCAGTTTCGCTCGGGACGA--GCTTGTACTTAGACATGCAT 1184 Query 468 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||| Sbjct 1185 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 1221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509918227712