Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq29598 120 2e-22 seq26121 102 6e-17 >seq29598 Length=358761 Score = 120 bits (132), Expect = 2e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 66263 TCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCA 66322 || ||||||||||| || | ||| | | || || |||||||| | ||| || ||| Sbjct 200500 TCTCCCCATACTTCATGTAGCCCTGGGCTTTCATGAGGGCACATCAGGGTCCAGTCTCCA 200559 Query 66323 TCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGT 66382 || ||| || | ||| |||| ||| || |||||||| ||||||| || || || Sbjct 200560 TCAGCTTCCACCCTTTTCATGAATAAATCTGGGATCCAGAGACCGTAGAACAGGTCCCGA 200619 Query 66383 GCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCA 66442 || | |||||||| | ||||| || || |||| ||||| ||||||||||| ||| Sbjct 200620 GCCCTCTGCTCCTCCTTACCGTGGTTCTTCTTACAGTCTAGGAAGTCAAAGATGTCTGCA 200679 Query 66443 TGCCATGGTTCCAGGTAGATGGCGAA 66468 ||||| || ||||||||||| ||||| Sbjct 200680 TGCCACGGCTCCAGGTAGATTGCGAA 200705 Score = 107 bits (118), Expect = 2e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 66037 CTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCC 66096 ||| |||| | || ||||| || || || || |||||||||||||| |||||||| Sbjct 199663 CTCATCAGCACTGGAGTACTCTACGATCTCTGTACACAGATTACTGCACTTGATGGTGCC 199722 Query 66097 CAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCC 66156 ||| || ||||| |||||||| || || |||||||| | |||||| || || || Sbjct 199723 CAAGTTTTGTTGGTTACTCTTCTTGTTACAATGGTCCTTGTAGACCATGTAAGGGGTACC 199782 Query 66157 GGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGT 66210 ||||| |||||||| |||||||| | ||| ||||| | ||||| | ||| Sbjct 199783 AGTCTCTGTCTGGGACTCGATGATGGCATACCACAGAGCCTGAGCCTTGATCGT 199836 >seq26121 Length=543453 Score = 102 bits (112), Expect = 6e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 |||| || || ||| || || ||||||| ||||| | ||||||||| |||| | | Sbjct 58994 ATGAGCCTCTTCTGCGGGAAAACGCTCGTCGCTTCGTCATCTTCCCCATCCAGTACCACG 58935 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144 | || |||| | ||||| ||||| || |||||||||||||| | |||||||| || Sbjct 58934 ACATCTGGCAGTTCTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCTGAGGAGGTTGACC 58875 Query 61145 TGTCCAAAGACATGAATGACTGGGAGCGT-TTATCGAGCGGTGAACAACATTTCATTAAA 61203 ||||||| ||| | | |||||| | ||| || || || ||| ||||| Sbjct 58874 TGTCCAAGGACCTTGACCACTGGGCCAATCTTAAGGA-CGAAGAGAGACACTTCATCTCG 58816 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTT 61253 ||||| | || |||||||| || || || |||||||||||||| || Sbjct 58815 CATGTTCTTGCTTTCTTTGCAGCCAGCGATGGCATCGTCAATGAGAACTT 58766 Score = 89.7 bits (98), Expect = 4e-13 Identities = 121/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 61434 GAAAGCGGATTGGGCCTTCAATTGGATCACCAGT-ACAACGGCTACATTTGGTGAACGAT 61492 |||||| | ||||| || || |||||| |||| ||| || || || || | ||| Sbjct 57145 GAAAGCACAGTGGGCTTTGAACTGGATCGGCAGTGACAGCGCTGACTTTGGGACGAGGAT 57086 Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552 || | || ||||| | || ||||| | || ||| || || || ||||||||||| | Sbjct 57085 TG-TCGCCTTTGCAGCAGTGGAGGGCATCTTCTTCTCAGGCTCTTTCGCCGCAATCTTCT 57027 Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGA 61598 || | ||||| || ||||| ||||||||||| |||||| |||||| Sbjct 57026 GGCTCAAGAAGCGAGGACTCATGCCCGGTCTTACCTTCTCCAATGA 56981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397413447552080