Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1377 250 4e-64 seq1367 250 4e-64 >seq1377 Length=314745 Score = 250 bits (276), Expect = 4e-64 Identities = 188/218 (86%), Gaps = 5/218 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | Sbjct 8092 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 8149 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| |||||||| |||| ||| | |||||||||| ||||||||| ||| |||||||| Sbjct 8150 CTCGTTCAAGACCAATAATTACAAGGGTCTATCCCCAGCACGATGAAGTTTGAAAGATTA 8209 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||| |||| | | || | ||||| || | |||||||||||||||||||||| Sbjct 8210 GCCGCACCTCCCAGTGTAGCAG---GACTCTCTGCCTTCATCAGTGTAGCGCGCGTGCGG 8266 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 218 |||||||||||||||||||||||||||||||||| ||| Sbjct 8267 CCCAGAACATCTAAGGGCATCACAGACCTGTTATGGCC 8304 Score = 250 bits (276), Expect = 4e-64 Identities = 188/218 (86%), Gaps = 5/218 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | Sbjct 115509 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 115452 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| |||||||| |||| ||| | |||||||||| ||||||||| ||| |||||||| Sbjct 115451 CTCGTTCAAGACCAATAATTACAAGGGTCTATCCCCAGCACGATGAAGTTTGAAAGATTA 115392 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||| |||| | | || | ||||| || | |||||||||||||||||||||| Sbjct 115391 GCCGCACCTCCCAGTGTAGCAG---GACTCTCTGCCTTCATCAGTGTAGCGCGCGTGCGG 115335 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 218 |||||||||||||||||||||||||||||||||| ||| Sbjct 115334 CCCAGAACATCTAAGGGCATCACAGACCTGTTATGGCC 115297 Score = 250 bits (276), Expect = 4e-64 Identities = 188/218 (86%), Gaps = 5/218 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | Sbjct 306014 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 306071 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| |||||||| |||| ||| | |||||||||| ||||||||| ||| |||||||| Sbjct 306072 CTCGTTCAAGACCAATAATTACAAGGGTCTATCCCCAGCACGATGAAGTTTGAAAGATTA 306131 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||| |||| | | || | ||||| || | |||||||||||||||||||||| Sbjct 306132 GCCGCACCTCCCAGTGTAGCAG---GACTCTCTGCCTTCATCAGTGTAGCGCGCGTGCGG 306188 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 218 |||||||||||||||||||||||||||||||||| ||| Sbjct 306189 CCCAGAACATCTAAGGGCATCACAGACCTGTTATGGCC 306226 >seq1367 Length=51388 Score = 250 bits (276), Expect = 4e-64 Identities = 188/218 (86%), Gaps = 5/218 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | Sbjct 3509 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 3566 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| |||||||| |||| ||| | |||||||||| ||||||||| ||| |||||||| Sbjct 3567 CTCGTTCAAGACCAATAATTACAAGGGTCTATCCCCAGCACGATGAAGTTTGAAAGATTA 3626 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||| |||| | | || | ||||| || | |||||||||||||||||||||| Sbjct 3627 GCCGCACCTCCCAGTGTAGCAG---GACTCTCTGCCTTCATCAGTGTAGCGCGCGTGCGG 3683 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 218 |||||||||||||||||||||||||||||||||| ||| Sbjct 3684 CCCAGAACATCTAAGGGCATCACAGACCTGTTATGGCC 3721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751989699010