Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1377 282 8e-74 seq1367 280 3e-73 seq1025 280 3e-73 >seq1377 Length=314745 Score = 282 bits (312), Expect = 8e-74 Identities = 232/280 (83%), Gaps = 2/280 (1%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 |||| ||| | || ||||| ||| | |||||||||| |||||||||||||||||| Sbjct 9008 ATGCTCTTAATTGAGTGTGTGTAGGACTTAAGACTTTTACTGTGAAAAAATTAGAGTGTT 8949 Query 99 CAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 ||||||||||| | ||| |||||| | |||||||||||||| |||||||| | |||||| Sbjct 8948 CAAAGCAGGCCATCGCTTGAATACCTGAGCATGGAATAATAAAATAGGACTTT-GGTTCT 8890 Query 159 ATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTAT 218 ||||||||||||| | |||| ||||||||||||||||| ||| ||||| | ||| Sbjct 8889 ATTTTGTTGGTTTTCGGAACCGAAGTAATGATTAATAGGGACAGTTGGGGGCATTCGTAC 8830 Query 219 TCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCA 278 | ||||||||||||||||||||||||||||| ||||| ||| ||||||||||| || Sbjct 8829 TTCATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTG 8770 Query 279 CCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||| |||||||||||||||| ||||||||||||| || Sbjct 8769 CCAAGAATGTTTTCATTAATCA-AGAACGAAAGTTAGAGG 8731 Score = 282 bits (312), Expect = 8e-74 Identities = 232/280 (83%), Gaps = 2/280 (1%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 |||| ||| | || ||||| ||| | |||||||||| |||||||||||||||||| Sbjct 114593 ATGCTCTTAATTGAGTGTGTGTAGGACTTAAGACTTTTACTGTGAAAAAATTAGAGTGTT 114652 Query 99 CAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 ||||||||||| | ||| |||||| | |||||||||||||| |||||||| | |||||| Sbjct 114653 CAAAGCAGGCCATCGCTTGAATACCTGAGCATGGAATAATAAAATAGGACTTT-GGTTCT 114711 Query 159 ATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTAT 218 ||||||||||||| | |||| ||||||||||||||||| ||| ||||| | ||| Sbjct 114712 ATTTTGTTGGTTTTCGGAACCGAAGTAATGATTAATAGGGACAGTTGGGGGCATTCGTAC 114771 Query 219 TCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCA 278 | ||||||||||||||||||||||||||||| ||||| ||| ||||||||||| || Sbjct 114772 TTCATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTG 114831 Query 279 CCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||| |||||||||||||||| ||||||||||||| || Sbjct 114832 CCAAGAATGTTTTCATTAATCA-AGAACGAAAGTTAGAGG 114870 Score = 282 bits (312), Expect = 8e-74 Identities = 232/280 (83%), Gaps = 2/280 (1%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 |||| ||| | || ||||| ||| | |||||||||| |||||||||||||||||| Sbjct 306930 ATGCTCTTAATTGAGTGTGTGTAGGACTTAAGACTTTTACTGTGAAAAAATTAGAGTGTT 306871 Query 99 CAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 ||||||||||| | ||| |||||| | |||||||||||||| |||||||| | |||||| Sbjct 306870 CAAAGCAGGCCATCGCTTGAATACCTGAGCATGGAATAATAAAATAGGACTTT-GGTTCT 306812 Query 159 ATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTAT 218 ||||||||||||| | |||| ||||||||||||||||| ||| ||||| | ||| Sbjct 306811 ATTTTGTTGGTTTTCGGAACCGAAGTAATGATTAATAGGGACAGTTGGGGGCATTCGTAC 306752 Query 219 TCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCA 278 | ||||||||||||||||||||||||||||| ||||| ||| ||||||||||| || Sbjct 306751 TTCATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTG 306692 Query 279 CCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||| |||||||||||||||| ||||||||||||| || Sbjct 306691 CCAAGAATGTTTTCATTAATCA-AGAACGAAAGTTAGAGG 306653 >seq1367 Length=51388 Score = 280 bits (310), Expect = 3e-73 Identities = 213/249 (86%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 70 GACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCA 129 |||||||||| ||||||||||||||||||||||||||||| | ||| |||||| | |||| Sbjct 4394 GACTTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGGCCATCGCTTGAATACCTGAGCA 4335 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189 |||||||||| |||||||| | ||||||||||||||||||| | |||| ||||||| Sbjct 4334 TGGAATAATAAAATAGGACTTT-GGTTCTATTTTGTTGGTTTTCGGAACCGAAGTAATGA 4276 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||||||||| ||| ||||| | ||| | |||||||||||||||||||||||||||| Sbjct 4275 TTAATAGGGACAGTTGGGGGCATTCGTACTTCATTGTCAGAGGTGAAATTCTTGGATTTA 4216 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 | ||||| ||| ||||||||||| || ||||| |||||||||||||||| ||||||| Sbjct 4215 TGAAAGACGAACAACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAA 4157 Query 310 AGTTAGGGG 318 |||||| || Sbjct 4156 AGTTAGAGG 4148 >seq1025 Length=4694 Score = 280 bits (310), Expect = 3e-73 Identities = 213/249 (86%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 70 GACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCA 129 |||||||||| ||||||||||||||||||||||||||||| | ||| |||||| | |||| Sbjct 2227 GACTTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGGCCATCGCTTGAATACCTGAGCA 2168 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189 |||||||||| |||||||| | ||||||||||||||||||| | |||| ||||||| Sbjct 2167 TGGAATAATAAAATAGGACTTT-GGTTCTATTTTGTTGGTTTTCGGAACCGAAGTAATGA 2109 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||||||||| ||| ||||| | ||| | |||||||||||||||||||||||||||| Sbjct 2108 TTAATAGGGACAGTTGGGGGCATTCGTACTTCATTGTCAGAGGTGAAATTCTTGGATTTA 2049 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 | ||||| ||| ||||||||||| || ||||| |||||||||||||||| ||||||| Sbjct 2048 TGAAAGACGAACAACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAA 1990 Query 310 AGTTAGGGG 318 |||||| || Sbjct 1989 AGTTAGAGG 1981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915187059072