Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1377 306 2e-80 seq1367 241 5e-61 seq1394 159 1e-36 seq1025 159 1e-36 >seq1377 Length=314745 Score = 306 bits (338), Expect = 2e-80 Identities = 245/293 (84%), Gaps = 17/293 (6%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAA 464 || ||||||||| |||||||||||||||||||||||| | |||||| | |||||| || Sbjct 116782 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCGAGTCGTAGGGTGTTAA 116841 Query 465 ACCCGTGCGCGTAATGAAAGTGAACG------------GAGGTGGGAACCCGTGAGGGTG 512 |||| ||||||||||||| || | |||||| || || || ||| || Sbjct 116842 ACCCCAAGGCGTAATGAAAGTAAAGGTCGCTTGCGACTGAGGTGAGAGCC-GTAAGG-TG 116899 Query 513 CACCATCGACCGATCCTGATGTCTTCG--GATGGATTTGAGTAAGAGCATAGCTGTTGGG 570 || ||||||||||||| ||| | | | ||||||||||||||||||| || |||||||| Sbjct 116900 CATCATCGACCGATCC-GATCTACTTGTAGATGGATTTGAGTAAGAGCGTACCTGTTGGG 116958 Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 116959 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAAG 117018 Query 631 CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| |||| | ||| ||||||||||| ||||||||||||||||||||||||| Sbjct 117019 CTCGTAGCGATCCTGACGTGCAAATCGGTCGTCAAATTTGGGTATAGGGGCGA 117071 Score = 159 bits (176), Expect = 1e-36 Identities = 136/165 (82%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAAT-GGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| | |||||| || |||||| |||||| ||| |||| | | | |||||||||||| Sbjct 7016 GAGTCGGGCTGTTTGAGAGTGCAGC-CTAAATTGGGTGGTAGACTCCATCTAAAGCTAAA 6958 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 ||| | | ||||||||||||| ||||||| |||| ||||||||||||| |||||| | Sbjct 6957 TATAGACGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAA 6898 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTG 203 |||||||||||| || |||||||| ||| |||||||| ||| || Sbjct 6897 AAGAGAGTTAAATAGTACGTGAAACCGTTAAAAGGGAAACGCATG 6853 Score = 159 bits (176), Expect = 1e-36 Identities = 136/165 (82%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAAT-GGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| | |||||| || |||||| |||||| ||| |||| | | | |||||||||||| Sbjct 116327 GAGTCGGGCTGTTTGAGAGTGCAGC-CTAAATTGGGTGGTAGACTCCATCTAAAGCTAAA 116385 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 ||| | | ||||||||||||| ||||||| |||| ||||||||||||| |||||| | Sbjct 116386 TATAGACGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAA 116445 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTG 203 |||||||||||| || |||||||| ||| |||||||| ||| || Sbjct 116446 AAGAGAGTTAAATAGTACGTGAAACCGTTAAAAGGGAAACGCATG 116490 Score = 89.7 bits (98), Expect = 2e-15 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAA 464 || ||||||||| |||||||||||||||||||||||| | |||||| | |||||| || Sbjct 6561 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCGAGTCGTAGGGTGTTAA 6502 Query 465 ACCCGTGCGCGTAATGAAAGTGAA 488 |||| ||||||||||||| || Sbjct 6501 ACCCCAAGGCGTAATGAAAGTAAA 6478 >seq1367 Length=51388 Score = 241 bits (266), Expect = 5e-61 Identities = 205/249 (82%), Gaps = 18/249 (7%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAA 464 || ||||||||| |||||||||||||||||||||||| | |||||| | |||||| || Sbjct 1994 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCGAGTCGTAGGGTGTTAA 1935 Query 465 ACCCGTGCGCGTAATGAAAGTGAACG------------GAGGTGGGAACCCGTGAGGGTG 512 |||| ||||||||||||| || | |||||| || || || ||| || Sbjct 1934 ACCCCAAGGCGTAATGAAAGTAAAGGTCGCTTGCGACTGAGGTGAGAGCC-GTAAGG-TG 1877 Query 513 CACCATCGACCGATCCTGATGTCTTCG--GATGGATTTGAGTAAGAGCATAGCTGTTGGG 570 || ||||||||||||| ||| | | | ||||||||||||||||||| || |||||||| Sbjct 1876 CATCATCGACCGATCC-GATCTACTTGTAGATGGATTTGAGTAAGAGCGTACCTGTTGGG 1818 Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1817 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAAG 1758 Query 631 CTCGCAGCG 639 |||| |||| Sbjct 1757 CTCG-AGCG 1750 Score = 159 bits (176), Expect = 1e-36 Identities = 136/165 (82%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAAT-GGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| | |||||| || |||||| |||||| ||| |||| | | | |||||||||||| Sbjct 2449 GAGTCGGGCTGTTTGAGAGTGCAGC-CTAAATTGGGTGGTAGACTCCATCTAAAGCTAAA 2391 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 ||| | | ||||||||||||| ||||||| |||| ||||||||||||| |||||| | Sbjct 2390 TATAGACGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAA 2331 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTG 203 |||||||||||| || |||||||| ||| |||||||| ||| || Sbjct 2330 AAGAGAGTTAAATAGTACGTGAAACCGTTAAAAGGGAAACGCATG 2286 >seq1394 Length=981283 Score = 159 bits (176), Expect = 1e-36 Identities = 136/165 (82%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAAT-GGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| | |||||| || |||||| |||||| ||| |||| | | | |||||||||||| Sbjct 31743 GAGTCGGGCTGTTTGAGAGTGCAGC-CTAAATTGGGTGGTAGACTCCATCTAAAGCTAAA 31685 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 ||| | | ||||||||||||| ||||||| |||| ||||||||||||| |||||| | Sbjct 31684 TATAGACGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAA 31625 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTG 203 |||||||||||| || |||||||| ||| |||||||| ||| || Sbjct 31624 AAGAGAGTTAAATAGTACGTGAAACCGTTAAAAGGGAAACGCATG 31580 >seq1025 Length=4694 Score = 159 bits (176), Expect = 1e-36 Identities = 136/165 (82%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAAT-GGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| | |||||| || |||||| |||||| ||| |||| | | | |||||||||||| Sbjct 202 GAGTCGGGCTGTTTGAGAGTGCAGC-CTAAATTGGGTGGTAGACTCCATCTAAAGCTAAA 144 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 ||| | | ||||||||||||| ||||||| |||| ||||||||||||| |||||| | Sbjct 143 TATAGACGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAA 84 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTG 203 |||||||||||| || |||||||| ||| |||||||| ||| || Sbjct 83 AAGAGAGTTAAATAGTACGTGAAACCGTTAAAAGGGAAACGCATG 39 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079969669700