Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1377 291 1e-76 seq1367 291 1e-76 seq1025 215 8e-54 >seq1377 Length=314745 Score = 291 bits (322), Expect = 1e-76 Identities = 220/257 (86%), Gaps = 3/257 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 |||| || || | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8233 ACTCTCTGCCTTCATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 8292 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||| ||| | ||| | |||||| | |||||| |||||||||||||| || Sbjct 8293 CCTGTTATGGCCCTA--CTTACTTTGGCTAAACGCCAATTGTCCCTCTAAGAAGTTCGCG 8350 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 || ||| | | |||||||| ||| || |||||||||||||| ||||||||| Sbjct 8351 TGTT-CCGTAGAACACGTAACTATTTAGTAGGATAGGGTCTCGTTCGTTAACGGAATTAA 8409 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8410 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 8469 Query 242 AGAGCTATCAATCTGTC 258 ||||||||||||||||| Sbjct 8470 AGAGCTATCAATCTGTC 8486 Score = 291 bits (322), Expect = 1e-76 Identities = 220/257 (86%), Gaps = 3/257 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 |||| || || | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 115368 ACTCTCTGCCTTCATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 115309 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||| ||| | ||| | |||||| | |||||| |||||||||||||| || Sbjct 115308 CCTGTTATGGCCCTA--CTTACTTTGGCTAAACGCCAATTGTCCCTCTAAGAAGTTCGCG 115251 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 || ||| | | |||||||| ||| || |||||||||||||| ||||||||| Sbjct 115250 TGTT-CCGTAGAACACGTAACTATTTAGTAGGATAGGGTCTCGTTCGTTAACGGAATTAA 115192 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 115191 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 115132 Query 242 AGAGCTATCAATCTGTC 258 ||||||||||||||||| Sbjct 115131 AGAGCTATCAATCTGTC 115115 Score = 291 bits (322), Expect = 1e-76 Identities = 220/257 (86%), Gaps = 3/257 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 |||| || || | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 306155 ACTCTCTGCCTTCATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 306214 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||| ||| | ||| | |||||| | |||||| |||||||||||||| || Sbjct 306215 CCTGTTATGGCCCTA--CTTACTTTGGCTAAACGCCAATTGTCCCTCTAAGAAGTTCGCG 306272 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 || ||| | | |||||||| ||| || |||||||||||||| ||||||||| Sbjct 306273 TGTT-CCGTAGAACACGTAACTATTTAGTAGGATAGGGTCTCGTTCGTTAACGGAATTAA 306331 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 306332 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 306391 Query 242 AGAGCTATCAATCTGTC 258 ||||||||||||||||| Sbjct 306392 AGAGCTATCAATCTGTC 306408 >seq1367 Length=51388 Score = 291 bits (322), Expect = 1e-76 Identities = 220/257 (86%), Gaps = 3/257 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 |||| || || | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3650 ACTCTCTGCCTTCATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 3709 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||| ||| | ||| | |||||| | |||||| |||||||||||||| || Sbjct 3710 CCTGTTATGGCCCTA--CTTACTTTGGCTAAACGCCAATTGTCCCTCTAAGAAGTTCGCG 3767 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 || ||| | | |||||||| ||| || |||||||||||||| ||||||||| Sbjct 3768 TGTT-CCGTAGAACACGTAACTATTTAGTAGGATAGGGTCTCGTTCGTTAACGGAATTAA 3826 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3827 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 3886 Query 242 AGAGCTATCAATCTGTC 258 ||||||||||||||||| Sbjct 3887 AGAGCTATCAATCTGTC 3903 >seq1025 Length=4694 Score = 215 bits (238), Expect = 8e-54 Identities = 174/207 (84%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 52 GCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAA 111 |||||||||||||||||| ||| | ||| | |||||| | |||||| |||||||||| Sbjct 1534 GCATCACAGACCTGTTATGGCCCTA--CTTACTTTGGCTAAACGCCAATTGTCCCTCTAA 1591 Query 112 GAAGCCAGCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTA 171 |||| || || ||| | | |||||||| ||| || |||||||||||||| Sbjct 1592 GAAGTTCGCGTGTT-CCGTAGAACACGTAACTATTTAGTAGGATAGGGTCTCGTTCGTTA 1650 Query 172 TCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATA 231 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1651 ACG-AATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATA 1709 Query 232 GAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||| Sbjct 1710 GAATCAAGAAAGAGCTATCAATCTGTC 1736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796789085334