Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq721 607 3e-171 seq2885 423 6e-116 seq572 327 4e-87 >seq721 Length=6814 Score = 607 bits (672), Expect = 3e-171 Identities = 462/541 (85%), Gaps = 20/541 (4%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | |||||||||||||| ||||| Sbjct 5974 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTCACCTTAGGACACCTGTGTTATC 5915 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||| ||||| || || | || Sbjct 5914 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACGATGTCTTCCACGTAGCTC 5855 Query 127 GGCCCGCGAAGGACCTTAA----CG--CCAGAAAATGGT-----CGGTGAAGACCAGTTC 175 |||| || | | || || | |||| || || || | | || Sbjct 5854 A-CCCGAGATAAATCCCAAGCTTCGATCTAGAACTAGGCACCCGCGAGGATGGCTAGG-- 5798 Query 176 CGCTTCATT---GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAA 232 |||| ||| | ||||||||| ||| || ||||||||||||||||||||||||| Sbjct 5797 CGCTACATAATGGGATAAGTAAAACAACATTAGAAGTAGTGGTATTTCACTTGCGCCGAA 5738 Query 233 ACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGC 292 |||||||||||||||||||||| |||||||||||||| ||| |||||||||||||| Sbjct 5737 ---GCTCCCACTTATTCTACACCTCCTAAGTCATTTCACAACGTCAGACTAGAGTCAAGC 5681 Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 5680 TCAACAGGGTCTTCTTTCCCCGCTGATTTTTCCAAGCCCGTTCCCTTGGCTGTGGGTTCG 5621 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct 5620 CTAGACAGTAGATAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCACTAGTTA 5561 Query 413 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5560 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 5501 Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 5500 TTGGTTGAATCTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAAC 5441 Query 533 A 533 | Sbjct 5440 A 5440 >seq2885 Length=9929 Score = 423 bits (468), Expect = 6e-116 Identities = 289/326 (89%), Gaps = 22/326 (7%) Strand=Plus/Minus Query 208 GTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATT 267 ||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||| Sbjct 1951 GTAGTGGTATTTCACTTGCGCCGAA---GCTCCCACTTATTCTACACCTC-CTAGTCATT 1896 Query 268 TCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAA 327 |||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1895 TCACAACGTCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTTTTCCAA 1836 Query 328 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 387 |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||| Sbjct 1835 GCCCGTTCCCTTGGCTGTGGGTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCATTA 1776 Query 388 ATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCAT 447 ||||||| ||||||||||||| || |||||||||||| |||||||| ||||||||||||| Sbjct 1775 ATCCATT-ATGCGCGTCACTAGTTCGATGACGAGGCACTTGGCTACTTTAAGAGAGTCAT 1717 Query 448 AGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCAC 507 ||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 1716 AGTTACT-----------------CTTGGTTGAATCTCTTCACTTTGACATTCAGAGCAC 1674 Query 508 TGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||| ||||||| Sbjct 1673 TGGGCAGAAATCACATTGTGTCAACA 1648 >seq572 Length=41908 Score = 327 bits (362), Expect = 4e-87 Identities = 287/353 (81%), Gaps = 6/353 (2%) Strand=Plus/Minus Query 182 ATTGATTAAGTaaaaaaaCGATAAGG-GTAGTGGTATTTCACTTGCGCCGAAACGGCTCC 240 || || ||||||||| ||| || || |||||||||||| ||||||||| || ||||| Sbjct 13087 ATGGAATAAGTAAAACAAC-ATGAGAAGTAGTGGTATTTTACTTGCGCCAAA---GCTCC 13032 Query 241 CACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGG 300 |||||||| |||||||| ||| |||||||| ||| ||||||||||||| |||||||| Sbjct 13031 CACTTATTTCACACCTCTTAAGGTTTTTCACAACGTCAGACTAGAGTCAAGATCAACAGG 12972 Query 301 GTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAG 360 || ||||| || |||| ||| ||||||| |||| | ||||||| ||||| | || Sbjct 12971 GTTTTCTTCCCGCGCTAATTTTTCCAAGCC-GTTCTTCTTGCTGTGGGACCGCTATACAG 12913 Query 361 TAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA 420 ||||||| |||||||||||| | ||||| |||||||| | |||||| |||||| ||| Sbjct 12912 TAGATAGCGACAGTGGGAATTTGATTAATTAATTCATGCTCATCACTATTTAGATACCGA 12853 Query 421 GGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGA 480 ||||||||||||| ||| |||||| | ||||||||| ||||||| | |||| ||||| Sbjct 12852 GGCATTTGGCTACTTTATGAGAGTTCTTATTACTCCCGTCGTTTACTTGTGCTTTGTTGA 12793 Query 481 ATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 || |||||||||| ||||| |||||||||||||||||| ||||| ||||||| Sbjct 12792 ATCTCTTCACTTTAACATTTCGAGCACTGGGCAGAAATCTCATTGTGTCAACA 12740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635149930176