Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_027197.1 Length=3753 Score E Sequences producing significant alignments: (Bits) Value seq617 122 2e-24 seq1120 120 7e-24 seq954 111 4e-21 seq2207 95.1 3e-16 seq2842 91.5 4e-15 seq408 80.6 6e-12 >seq617 Length=24680 Score = 122 bits (134), Expect = 2e-24 Identities = 156/210 (74%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 1523 TTACAACAAGAATCTGGACAACCGTTTCTTCGACTTGTACCAGCCAAAAGTGCACACGCA 1582 |||||| ||| | || ||||||| ||| | ||||||||| | | ||| | || Sbjct 22566 TTACAAGAAGGACCTCAACAACCGCTTCATGGACTTGTACAACGAGGATCATCACTCCCA 22625 Query 1583 CATGCTTCTTCAAGATGTCGA-TCACACGACGGTTGAAAAGTTGGGAGTCCAGTTCCTAA 1641 |||||| ||| ||||| | || || || ||| | || ||| | || || |||| ||| | Sbjct 22626 CATGCTACTTGAAGATCTGGACTCCAACAACG-TGGAGAAGCTCGGTGTTCAGTACCTCA 22684 Query 1642 AGACCATCTGTGACGAAG-CTGGTTTCCCAGTTGACCAAAAGTACAAGACGCCGCAACTG 1700 |||||||||| ||||||| | ||||||||| | ||||| ||||||||| |||| |||| | Sbjct 22685 AGACCATCTGCGACGAAGCCGGGTTTCCCA-TCGACCAGAAGTACAAGTCGCCTCAACCG 22743 Query 1701 GCTCGTACCACTGTCTTGGTCTCTTCCAAC 1730 | ||| ||||||| | || |||||||| Sbjct 22744 ACGCGTGTCACTGTCCTCATCACTTCCAAC 22773 >seq1120 Length=897 Score = 120 bits (132), Expect = 7e-24 Identities = 153/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 1524 TACAACAAGAATCTGGACAACCGTTTCTTCGACTTGTACCAGCCAAAAGTGCACACGCAC 1583 ||||| ||| | || ||||||| ||| | ||| | ||| | | | || ||||| Sbjct 49 TACAAGAAGGACCTCAACAACCGGTTCATGGACCTCTACAACGAAGATCATCATTCGCAC 108 Query 1584 ATGCTTCTTCAAGATGTCGA-TCACACGACGGTTGAAAAGTTGGGAGTCCAGTTCCTAAA 1642 ||||| || ||||| | || || || ||| | || ||| |||| || |||| ||| || Sbjct 109 ATGCTGCTCGAAGATCTGGACTCCAACAACG-TGGAGAAGCTGGGTGTTCAGTACCTCAA 167 Query 1643 GACCATCTGTGACGAAGCTGGTTTCCCAGTTGACCAAAAGTACAAGACGCCGCAACTGGC 1702 ||||||||| |||||||| || ||||| | ||||| ||||||||| ||||||||| | | Sbjct 168 GACCATCTGCGACGAAGCCGGGTTCCCGATCGACCAGAAGTACAAGTCGCCGCAACCGAC 227 Query 1703 TCGTACCACTGTCTTGGTCTCTTCCAAC 1730 ||| |||||| || || |||||||| Sbjct 228 ACGTGTCACTGTGCTGATCACTTCCAAC 255 >seq954 Length=5718 Score = 111 bits (122), Expect = 4e-21 Identities = 173/241 (72%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 1524 TACAACAAGAATCTGGACAACCGTTTCTTCGACTTGTACCAGCCAAAAGTGCACACGCAC 1583 ||||| ||| | ||| |||||| ||||||||||||||| | || || || || ||| Sbjct 1003 TACAAGAAGGACCTGTCCAACCGCTTCTTCGACTTGTACGACGACAAGGTCCATACCCAC 1062 Query 1584 ATGCTTCTTC-AAGATGTCGATCACACGACG--GTTGAAAAGTTGGGAGTCCAGTTCCTA 1640 || || | || |||| ||| || |||| || ||| | | ||| | || ||||| Sbjct 1063 AT-CTGCCTCGAAGACCTCG-TCTG-CGACAATGTGGAACGGCTCGGATTGCAATTCCTC 1119 Query 1641 AAGACCATCTGTGACGAAGCTGGTTTCCCAGTTGACCAAAAGTACAAGACGCCGCAACTG 1700 ||||| |||| || |||| ||| ||||| | ||||| ||||||||||| || || ||| Sbjct 1120 AAGACGCTCTGCGATGAAGGTGGGTTCCCTATCGACCAGAAGTACAAGACACCTCAGCTG 1179 Query 1701 GCTCGTACCACTGTCTTGGTCTCTTCCAACTTCACCATCAACGATGTGATTCCGGAAGAC 1760 | || | | | || ||||| | ||||||| ||||| |||| | || ||||||||| Sbjct 1180 ACCCGCAGCTCCATCCTGGTCACGTCCAACTATTCCATCGACGACATCATCCCGGAAGAC 1239 Query 1761 A 1761 | Sbjct 1240 A 1240 >seq2207 Length=727 Score = 95.1 bits (104), Expect = 3e-16 Identities = 231/340 (68%), Gaps = 10/340 (3%) Strand=Plus/Minus Query 1485 GGCAAGTCTGCCATCTTGCAGGTCATCTATCCTGCGTATTACAACAAGAATCTGGACAAC 1544 |||||| | ||||||| ||| |||| || | ||||| ||| | ||| |||| Sbjct 538 GGCAAGACGTCCATCTTCCAGTGGCTCTACCCCGACATGTACAAGAAGGACCTGTCCAAC 479 Query 1545 CGTTTCTTCGACTTGTACCAGCCAAAAGTGCACACGCACATGCTTCTTC-AAGATGTCGA 1603 || ||||||||| | ||| | || ||||||||||| || || | || |||| |||| Sbjct 478 CGCTTCTTCGACCTCTACGACGACAAGGTGCACACGCATAT-CTGCCTCGAAGACCTCGA 420 Query 1604 TCAC-ACGACGGTTGAAAAGTTGGGAGTCCAGTTCCTAAAGACCATCTGTGACGAAGCTG 1662 | || ||| | || |||| |||| ||||| ||||| | || ||||||| || Sbjct 419 CTGCGACAACG-TGGAGCGCCTGGGTCTCCAATTCCTCAAGACACTGTGCGACGAAGGTG 361 Query 1663 GTTTCCCAGTTGACCAAAAGTACAAGACGCCGCAACTGGCTCGTACCACTGTCTTGGTCT 1722 | ||||| | || ||||||||||||||||| ||||| | || | | | || | ||| Sbjct 360 GGTTCCCCATCGATCAAAAGTACAAGACGCCTCAACTCACGCGCAGCTCCATCCTCGTCA 301 Query 1723 CTTCCAACTTCACCATCAACGATGTGATTCCGGAAGACATGCCAGGACGCAATGAAA-AT 1781 | || || | | || | || | || |||||||||| | |||| || |||| Sbjct 300 CCTCGAATTATTCGATTGATGACATCATCCCGGAAGACA-CCAAGGA--CATCGAAACCG 244 Query 1782 CTAA--CGGCTCTGCGTCGTCGCTTCTATGAAGTGAACGT 1819 | || ||||| || ||||||||||| | || ||||| Sbjct 243 CCAAGGCGGCTTTGTATCGTCGCTTCTTCCACGTCAACGT 204 >seq2842 Length=2103 Score = 91.5 bits (100), Expect = 4e-15 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 1524 TACAACAAGAATCTGGACAACCGTTTCTTCGACTTGTACCAGCCAAAA----GTGCACAC 1579 ||||| || | || | ||||| ||||||||| | || | || | || ||||| Sbjct 666 TACAAGAAAGACTTGCAGAACCGGTTCTTCGACCTCTATGACGGAAGACACAGTCCACAC 607 Query 1580 GCACATGCTTCTTCAAGATGTCGATCACACGACGGTTGAAAAGTTGGGAGTCCAGTTCCT 1639 |||| | || ||||| |||| || | | |||||| | || ||||| || || Sbjct 606 ACACACCATGCTCGAAGATCTCGACAGCAACAACCTGGAAAAGCTTGGCGTCCAATTTCT 547 Query 1640 AAAGACCATCTGTGACGAAGCTGGTTTCCCAGTTGACCAAAAGTACAAGACGCCGCAACT 1699 |||||||||||||| ||||| || || ||| |||| |||||||||||||| || || | Sbjct 546 GAAGACCATCTGTGATGAAGCCGGCTTTCCAATTGATCAAAAGTACAAGACACCACAGGT 487 Query 1700 GGCTCGTACCACTGTCTTGGTCTCTTCCAAC 1730 | | || || ||||| | || | |||||| Sbjct 486 GACACGCACAACTGTTCTTATCACGTCCAAC 456 >seq408 Length=60353 Score = 80.6 bits (88), Expect = 6e-12 Identities = 112/152 (74%), Gaps = 4/152 (3%) Strand=Plus/Plus Query 1581 CACATGCTTCTTCAAGATGTCGA-TCACACGACGGTTGAAAAGTTGGGAGTCCAGTTCCT 1639 |||||||| || ||||| | || || || ||| | || ||| |||| || |||| ||| Sbjct 56237 CACATGCTGCTAGAAGATCTGGACTCCAACAACG-TCGAGAAGCTGGGTGTGCAGTACCT 56295 Query 1640 AAAGACCATCTGTGACGAAG-CTGGTTTCCCAGTTGACCAAAAGTACAAGACGCCGCAAC 1698 ||||||||||| ||||||| | | ||||||| | | ||| ||||||||| |||| || | Sbjct 56296 CAAGACCATCTGCGACGAAGTCGGCTTTCCCA-TCGGCCAGAAGTACAAGTCGCCTCAGC 56354 Query 1699 TGGCTCGTACCACTGTCTTGGTCTCTTCCAAC 1730 | | || |||||| | || | |||||| Sbjct 56355 CGACGCGCGTCACTGTGCTCATCACCTCCAAC 56386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11897201541940