Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000313105.1_202012-11-06] 11,133 sequences; 32,990,475 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq882 338 9e-91 seq40 235 8e-60 seq3953 129 9e-28 seq364 100 4e-19 seq2478 91.5 2e-16 >seq882 Length=547 Score = 338 bits (374), Expect = 9e-91 Identities = 202/208 (97%), Gaps = 3/208 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 343 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 400 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 401 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 460 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 461 CCCGGGCCTGTCGGCCAAGGTG-TGAACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 519 Query 181 CCCAGAACATCTAAGGGCATCACAGACC 208 |||||||||||||||||||||||||||| Sbjct 520 CCCAGAACATCTAAGGGCATCACAGACC 547 >seq40 Length=507 Score = 235 bits (260), Expect = 8e-60 Identities = 180/209 (86%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| || |||||||||||| | Sbjct 301 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCATTTACTAGGAATT-C 358 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAA-ATTTCAAAGATT 119 |||||| |||| | |||||||| ||||||||| | ||||||| |||| |||||| Sbjct 359 CTCGTTCAAGATTGAAAATTGCAACAATCTATCCCTAGCACGATGCGCATTTACAAGATT 418 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| |||| |||||| || |||||||||| ||||||||||||||||||||| Sbjct 419 ACCCAGACCTATCGGTCAAGGTTTTAAACTCGTTGAACGCATCAGTGTAGCGCGCGTGCG 478 Query 180 GCCCAGAACATCTAAGGGCATCACAGACC 208 ||||||||||||||||||||||||||||| Sbjct 479 GCCCAGAACATCTAAGGGCATCACAGACC 507 >seq3953 Length=182 Score = 129 bits (142), Expect = 9e-28 Identities = 81/86 (94%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 171 GCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGT 230 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1 GCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTT 60 Query 231 GGCCTAAAAGGCCAT-CTCCCTCGAA 255 |||||||| |||||| |||||| || Sbjct 61 GGCCTAAACGGCCATAGTCCCTCTAA 86 >seq364 Length=184 Score = 100 bits (110), Expect = 4e-19 Identities = 57/58 (98%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 171 GCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1 GCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCCAACTTCC 58 >seq2478 Length=6100 Score = 91.5 bits (100), Expect = 2e-16 Identities = 81/102 (79%), Gaps = 6/102 (6%) Strand=Plus/Minus Query 133 GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCT 192 || |||||| || ||| |||||| ||| |||||| ||||||||||||||||||||||| Sbjct 3224 GGTCAAGGTTTTAAACTTGTTGAACGCATGAGTGTAACGCGCGTGCGGCCCAGAACATCT 3165 Query 193 AAGGG------CATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||| || |||||| |||| |||||| ||||||| Sbjct 3164 AAGGGTATATATATTACAGACGTGTTGTTGCCTACAACTTCC 3123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751918896095