Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000313105.1_202012-11-06] 11,133 sequences; 32,990,475 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq143 260 6e-67 seq1750 228 3e-57 seq2412 100 1e-18 seq2245 91.5 6e-16 >seq143 Length=1183 Score = 260 bits (288), Expect = 6e-67 Identities = 255/325 (78%), Gaps = 29/325 (9%) Strand=Plus/Plus Query 387 TGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATG 446 ||||| ||||| | |||||||||||| |||||||||||||||||||||||| | || Sbjct 829 TGGCGAAATGGAGCGATTCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTG 888 Query 447 CGAGTGTTTGGGTGTC-AAACCCGTGCGCGTAATGAAAGTGAACGG-------------- 491 | ||| ||||||||| |||||| | ||||||||||||| || || Sbjct 889 CAAGTATTTGGGTGTTGAAACCCCAGTGCGTAATGAAAGTAAAGGGTAATGTAGATTGCC 948 Query 492 --AGGTGGGAACCCG-TG-AGGGTGC----ACCATCGACCGATCCTGATGTCTTCG---- 539 |||| |||| || || | ||||| || ||||||||||| ||| ||||| Sbjct 949 TTAGGTAGGAAAGCGCTGTATGGTGCTGGCACTATCGACCGATCATGAAC-CTTCGTGGT 1007 Query 540 GATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAAT 599 || ||||||||| ||||| | |||||| ||||||||||||||||||||||||||| | Sbjct 1008 GAAAGATTTGAGTTTGAGCACATATGTTGGTACCCGAAAGATGGTGAACTATGCCTGAGT 1067 Query 600 AGGGTGAAGCCAGAGGAAACTC-TGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGA 658 ||||||||||||| |||||||| ||||||| ||||| |||| ||||| |||||||||||| Sbjct 1068 AGGGTGAAGCCAGGGGAAACTCTTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGA 1127 Query 659 TCGTCAAATTTGGGTATAGGGGCGA 683 |||||||| |||||||||||||||| Sbjct 1128 TCGTCAAACTTGGGTATAGGGGCGA 1152 Score = 176 bits (194), Expect = 2e-41 Identities = 135/160 (84%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || | || |||||||| | ||||||||||||| Sbjct 304 GAGTCGCGTTGTTTGGGAATGCAGCGCAAAGTAGGTGGTAAATTCCATCTAAAGCTAAAT 363 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || | ||||||||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 364 ATAAGTGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 423 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||||| || || ||||| || ||||||||||||| Sbjct 424 AGAGAGTTAAAGAGTACCTGAAACTGCTGAAAGGGAAGCG 463 >seq1750 Length=1431 Score = 228 bits (252), Expect = 3e-57 Identities = 221/281 (79%), Gaps = 5/281 (2%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| ||||||||||||||||||| |||| | ||||||| ||||| | Sbjct 1123 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGAGTA 1182 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGAC 522 ||||||| | ||||| ||| ||| || | || ||| |||||||| |||| Sbjct 1183 AACCCGTAAGGCGTAAGGAAGCTGATTGGCTG---GATCCCTCACGGGTGCACAGCCGAC 1239 Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582 ||| | |||| | | || || || |||| |||||| |||| ||||||||||||||| Sbjct 1240 CGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGATG 1299 Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642 ||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| | Sbjct 1300 GTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGATA 1359 Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 1360 CTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 1400 Score = 163 bits (180), Expect = 1e-37 Identities = 135/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| |||||||||||||||||| | || ||| |||||||| | || || || Sbjct 737 TCTACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 796 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 ||||||| ||| |||||||||||||| ||||||| | || |||||||||||| |||| Sbjct 797 TAAATATGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGTAAAGATGAAAAGGACTT 856 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 857 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 901 >seq2412 Length=40916 Score = 100 bits (110), Expect = 1e-18 Identities = 82/100 (82%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 61 CAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCG 120 |||| | || | || |||||||| | ||||||||||||||| | ||||||||||||| Sbjct 38101 CAGCGCAAAGTAGGTGGTAAATTCCATCTAAAGCTAAATATAAGTGCGAGACCGATAGCG 38160 Query 121 CACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAA 160 ||||||| |||| ||||||||||||| |||||||||| Sbjct 38161 AACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAA 38200 >seq2245 Length=13263 Score = 91.5 bits (100), Expect = 6e-16 Identities = 70/82 (85%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 411 GTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCAAACCCG 469 |||||| |||||||||||||||||||||||| | ||| ||| |||||||| | |||||| Sbjct 904 GTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCAAGTATTTGGGTGTTGAAACCCC 963 Query 470 TGCGCGTAATGAAAGTGAACGG 491 | ||||||||||||| || || Sbjct 964 AGTGCGTAATGAAAGTAAAGGG 985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079761197150