Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000313105.1_202012-11-06] 11,133 sequences; 32,990,475 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq92 199 1e-48 seq8043 145 2e-32 seq2993 122 3e-25 >seq92 Length=2558 Score = 199 bits (220), Expect = 1e-48 Identities = 255/344 (74%), Gaps = 7/344 (2%) Strand=Plus/Minus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGG-CTTACCAAGGCGACGATCAGTAGCCGAC 219 |||| |||||| ||||||||| ||| | ||||||||| | | ||| |||| | Sbjct 658 GCGTAAGATTAGGTAGTTGGTAGTTTAATAGACTTACCAAGCCTGCAATCTTTAGCTGGT 599 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCT-ACGGGAGGCA 278 ||| || |||| |||||||||| ||||||| |||| ||||||| | | ||||| Sbjct 598 TTGAAAGAACGATCAGCCACATTGGGACTGAGAAACGGCCCAAACTTTTTAAAAAAGGCA 539 Query 279 GCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATG 338 |||||| ||||| ||| |||||| || ||||| |||| |||||| || ||||| || | Sbjct 538 GCAGTGAGGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAATACCAAGTGAGTGAAG 479 Query 339 AAGGC-CTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGG 397 ||||| ||| ||||| |||| || | ||||| || |||||| |||||| | || | Sbjct 478 AAGGCTAAATAGGTTGTAAAACTCTTTCGTTAAGGAGGAAAATGACAGTACTTAAAGAAG 419 Query 398 AAGCCCCGGCTAACTA--CGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATC 455 ||| | |||||| || ||||||||||| |||||||||||| | || ||| |||| Sbjct 418 AAGTTCTGGCTAA-TACCCGTGCCAGCAGTCGCGGTAATACGGGAAGAGCGAGCATTATT 360 Query 456 CGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 | ||| | | |||||||||||| |||||| |||| |||||| Sbjct 359 CAAAATGA-TTAGGCGTAAAGGGTTTGTAGGTTGTTTTTTAAGT 317 >seq8043 Length=2724 Score = 145 bits (160), Expect = 2e-32 Identities = 185/250 (74%), Gaps = 5/250 (2%) Strand=Plus/Minus Query 192 CTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAG 251 ||||||||| | || || |||| | ||| || |||| |||||||||| |||||| Sbjct 1525 CTTACCAAGCCTACAGTCTTTAGCTGGTTTGAAAGAACGATCAGCCACATTGGGACTGAG 1466 Query 252 ACACGGTCCAAACTCCT-ACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGC 310 | |||| ||||||| | | ||||||||||| ||||| ||| |||||| || ||||| Sbjct 1465 AAACGGCCCAAACTTTTTAAAAAAGGCAGCAGTGAGGAATTTTGGACAATGAGCGAAAGC 1406 Query 311 CTGATGCAGCAACGCCGCGTGAGCGATGAAGGC-CTTCGGGTCGTAAAGCTCTGTCCTCA 369 |||| |||||| || |||| || |||||| ||| |||| |||| || | | Sbjct 1405 TTGATCCAGCAATACCAAGTGACTGAAGAAGGCTAAATAGGTTATAAAACTCTATCGTTA 1346 Query 370 AGGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTA--CGTGCCAGCAGCCG 427 |||| || |||||| |||||| | || ||| | |||||| || ||||||||||| || Sbjct 1345 AGGAGGAAAATGACAGTACTTAAAGAAGAAATTCTGGCTAA-TACCCGTGCCAGCAGTCG 1287 Query 428 CGGTAATACG 437 |||||||||| Sbjct 1286 CGGTAATACG 1277 >seq2993 Length=1160 Score = 122 bits (134), Expect = 3e-25 Identities = 89/102 (87%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| |||||||||| |||||||||||||||||||||| |||| || ||||||| || Sbjct 1072 AAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTTAATCG 1013 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 |||||||| |||||||||| | ||||||||||||| |||||| Sbjct 1012 GAATTACT-GGGCGTAAAGCGCGCGTAGGTGGTTTGTTAAGT 972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497433272192