Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000313105.1_202012-11-06] 11,133 sequences; 32,990,475 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2204 493 4e-137 seq204 407 4e-111 seq8540 161 3e-37 seq307 123 8e-26 >seq2204 Length=700 Score = 493 bits (546), Expect = 4e-137 Identities = 366/420 (87%), Gaps = 12/420 (3%) Strand=Plus/Minus Query 94 CTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAAT 153 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 700 CTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAAT 641 Query 154 TCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGC 213 || |||| ||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 640 TCTCCGTCACCCGTTACCACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGC 581 Query 214 AGAAATTTGAATGAACCATCGCCGGCTC-AAGGCCATGCGATTCGTTAAGTTATTATGAA 272 |||||||||||||| | ||||| || | ||||||||||||| ||| |||||| ||||| Sbjct 580 AGAAATTTGAATGATGCGTCGCCAGCACTAAGGCCATGCGATCCGTCGAGTTATCATGAA 521 Query 273 TCACCAAGGAGC--CCCGAAG----GGCGTTGGTTTTTTATCTAATAAATACACCCCTTC 326 ||| || |||| | | || |||| | ||||||||||||||| || |||||| Sbjct 520 TCATCA--GAGCAACGGGCAGAGCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTC 463 Query 327 C-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA 385 | ||||||||||||| | ||| ||||||||||||||||||| |||||||||| ||||| Sbjct 462 CAGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGT- 404 Query 386 AGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGA 445 || ||| |||||| |||| ||||||||||||||||||||||||||||||||| || | | Sbjct 403 AGTTACCATCAAACAAACTATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTCTGAA 344 Query 446 TT-GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || | | ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 343 TTCGTTCATACTTACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 284 >seq204 Length=427 Score = 407 bits (450), Expect = 4e-111 Identities = 347/422 (82%), Gaps = 17/422 (4%) Strand=Plus/Plus Query 94 CTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAAT 153 |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 1 CTGCCTTCCTTGGATGTGGTAGCCGTTTCTAAGGCTCCCTCTCCGGAATCAAACCCTAAT 60 Query 154 TCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGC 213 ||||||||||||||| || |||||||||||| |||||||||||| |||| ||||||||| Sbjct 61 TCCCCGTTACCCGTTAATGCCATGGTAGGCCCATATCCTACCATCCAAAGCTGATAGGGC 120 Query 214 AGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAAT 273 ||||| | | || ||| | | ||| |||||| || ||||||||||| | Sbjct 121 AGAAACTCAATCGATTTATCCGCA-CAAAAG----TGCGATCCGCACAGTTATTATGATT 175 Query 274 CACCA----AGGAGCCCCGAAGG-GCGTTGGTTTTTTATCTAATAAATACACCCCTTCCG 328 || || | ||||| ||| || ||||||| ||||||||||| | ||| ||| Sbjct 176 CAACACAATACCAGCCCGAAAGCTGCATTGGTTTCA-ATCTAATAAATGCTACCCGCCCG 234 Query 329 A-----AGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAG 383 | ||| ||| || | ||||||||||||||||||||||| |||| |||||| |||| Sbjct 235 ACAAGCAGTTGGGTATTGTTGCATGTATTAGCTCTAGAATTACTACGGGTATCCAAGTAG 294 Query 384 TAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-T 442 |||||||||||| | || || ||||||||| ||||||||||||||||||||||| ||| Sbjct 295 TAAGGTACTATCGAGTAGACTATAACTGATATAATGAGCCATTCGCAGTTTCACAGTACA 354 Query 443 AGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGC 502 | |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 355 AAATTGTTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCGTATGACTACTGGC 414 Query 503 AG 504 || Sbjct 415 AG 416 >seq8540 Length=188 Score = 161 bits (178), Expect = 3e-37 Identities = 105/114 (92%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | || |||||| |||| |||||||||||||||||| Sbjct 76 GTACTCATTCCAATTACCAGACTCGAA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 134 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTA 114 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 135 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTA 188 >seq307 Length=189 Score = 123 bits (136), Expect = 8e-26 Identities = 98/115 (85%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCT-GTATCAGTATTTATTGTCACTACC 59 || |||||||||||| | ||| | || ||||| | || ||||||||||||||||| Sbjct 76 GTTCTCATTCCAATTGCCCGACTCGAA-GAGCCAGAGCATTGTTATTTATTGTCACTACC 134 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTA 114 |||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 135 TCCCTGTGTCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTA 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510231847168