Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq44 268 4e-69 seq43 176 2e-41 seq4020 93.3 2e-16 seq2460 93.3 2e-16 >seq44 Length=1066 Score = 268 bits (296), Expect = 4e-69 Identities = 255/324 (79%), Gaps = 28/324 (9%) Strand=Plus/Minus Query 387 TGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATG 446 ||||| ||||| | |||||||||||| |||||||||||||||||||||||| | || Sbjct 944 TGGCGAAATGGAGCGATTCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTG 885 Query 447 CGAGTGTTTGGGTGTC-AAACCCGTGCGCGTAATGAAAGTGAACGG-------------- 491 | ||| ||||||||| |||||| | ||||||||||||| || || Sbjct 884 CAAGTATTTGGGTGTTGAAACCCCAGTGCGTAATGAAAGTAAAGGGTAATGTAGATTGCC 825 Query 492 --AGGTGGGAACCCG-TG-AGGGTGC----ACCATCGACCGATCCTGATGTCTTCG---- 539 |||| |||| || || | ||||| || ||||||||||| ||| ||||| Sbjct 824 TTAGGTAGGAAAGCGCTGTATGGTGCTGGCACTATCGACCGATCATGAAC-CTTCGTGGT 766 Query 540 GATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAAT 599 || ||||||||| ||||| | |||||| ||||||||||||||||||||||||||| | Sbjct 765 GAAAGATTTGAGTTTGAGCACATATGTTGGTACCCGAAAGATGGTGAACTATGCCTGAGT 706 Query 600 AGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGAT 659 ||||||||||||| ||||||||||||||| ||||| |||| ||||| ||||||||||||| Sbjct 705 AGGGTGAAGCCAGGGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGAT 646 Query 660 CGTCAAATTTGGGTATAGGGGCGA 683 ||||||| |||||||||||||||| Sbjct 645 CGTCAAACTTGGGTATAGGGGCGA 622 >seq43 Length=645 Score = 176 bits (194), Expect = 2e-41 Identities = 135/160 (84%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || | || |||||||| | ||||||||||||| Sbjct 194 GAGTCGCGTTGTTTGGGAATGCAGCGCAAAGTAGGTGGTAAATTCCATCTAAAGCTAAAT 253 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || | ||||||||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 254 ATAAGTGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 313 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||||| || || ||||| || ||||||||||||| Sbjct 314 AGAGAGTTAAAGAGTACCTGAAACTGCTGAAAGGGAAGCG 353 >seq4020 Length=5822 Score = 93.3 bits (102), Expect = 2e-16 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 61 CAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCG 120 |||| | || | || |||||||| | ||||||||||||||| | ||||||| ||||| Sbjct 3229 CAGCGCAAAGTAGGTGGTAAATTCCATCTAAAGCTAAATATAAGTGCGAGACCGGTAGCG 3170 Query 121 CACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||||| |||| ||||||||||||| ||||||||| Sbjct 3169 AACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAA 3131 >seq2460 Length=2997 Score = 93.3 bits (102), Expect = 2e-16 Identities = 71/83 (86%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 410 CGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCAAACCC 468 ||||||| |||||||||||||||||||||||| | ||| ||| |||||||| | |||||| Sbjct 1110 CGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCAAGTATTTGGGTGTTGAAACCC 1051 Query 469 GTGCGCGTAATGAAAGTGAACGG 491 | ||||||||||||| || || Sbjct 1050 CAGTGCGTAATGAAAGTAAAGGG 1028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079875933200