Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000961115.1_202015-03-24] 5,784 sequences; 32,721,549 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3351 131 1e-25 seq1503 116 3e-21 >seq3351 Length=46634 Score = 131 bits (144), Expect = 1e-25 Identities = 959/1513 (63%), Gaps = 63/1513 (4%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 |||||| ||||| ||||| |||| || | || | ||||||||||| || || Sbjct 39588 ATCGACTGTGAATTGGATTGCATCTGCTCTTGGACGTGTTCGGAGATAGTACATTCCTGT 39529 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATA-ATTCGGCT 65195 |||||| || ||| || |||||||||||||| | | | ||| | | | |||| | Sbjct 39528 CTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGAAG-TGAGTTTACTGACAGTCGGGT 39470 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 |||| | || ||||| | || ||||||||| ||||| || ||||| ||||||| Sbjct 39469 CGGCAATGTGAATATTTAGTGATTGACTCTGACAAATGTACGCTCCTCGATCGGCAGCCA 39410 Query 65256 TGTCAATGATACGACGTCCCGAT-ATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCA 65314 |||| | || || | | | || ||||| || || |||||| || | | Sbjct 39409 TGTCCAAAAT-CGCCTTTTGCTTGATTTCCCAAACTGTTTTGTACTTTTCTTTCACATGA 39351 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGA-CGTGCAATAATGCGATTACGCAT 65373 ||||| || | || | || || ||||| ||| || | || || |||| || | Sbjct 39350 GGCGGAATTTCAGCGATATTTTGTACGGAACCGCGATCGCG-AAGGATTTGATTCCGAA- 39293 Query 65374 CGACTC-TGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGAC-- 65430 || || || ||||||| || || ||||| | || ||| | || ||| |||| Sbjct 39292 CGTCTGATGTCCACAAATTCATCTCAATAAGCTCTT---CCATGAGATATTTGTTGACAA 39236 Query 65431 TTGGAACT-CGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGG 65489 ||| || | | || | || || || || | |||||||| |||| || || | | Sbjct 39235 TTGTAAATTCTCCAGCGAGGACGCGTCGATTGAACATGTTGGAAGTGAACGGCTCGATAG 39176 Query 65490 ATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATG 65549 | || ||||| |||||||| || || || || |||||||| ||||||| || ||| | Sbjct 39175 ACTCGCAATTGCCGAGAATTTGAGCCGTTGAGGCGGTTGGCATCGGAGCGAGCAGCAAAG 39116 Query 65550 AGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCAC--ATCGG 65607 ||||||| | ||||| | | | | | ||| | | ||| | ||| | ||| Sbjct 39115 AGTTTCGGATTCCGTGAGTAGCTACTTGCTCTTTCAACTGCTTCCAATCCCATCGACCGG 39056 Query 65608 TTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGA 65667 |||| || || || |||||||||| ||| | | | || ||| | ||||| Sbjct 39055 A--ATCGG-GA-ATG-ACCTGCCACATATCAAATTGAAAGATACCTCGACTAACTGGTGA 39001 Query 65668 ACCGAGGAAA-CTATCGTACACTCCCTCCTCCT-TGGCAAGT---TGACAGCTGGTCTCG 65722 || || | | || |||||| ||| ||| || ||| | || |||| || Sbjct 39000 TCC-AGCATAGCTCTCGTACGGTCCGAGTTCCCGTGCCAATTCCATGGAAGCT----TCC 38946 Query 65723 AGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTC 65782 | || || ||||| || || || ||||| | || || || || || | | ||| Sbjct 38945 ATCGCCGCGAAATACATCGTTTCAAAAATTTCTTTGTTGAGCTCGCGAGCAGCTTTGCTT 38886 Query 65783 TCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATG 65842 || | || | || |||||| | ||| || ||||| ||||||||||| || || || || Sbjct 38885 TCAAATGGAAGACTCATCAGTAAAAACGTATCGGCAAGACCTTGAACGCCGATTCCAATC 38826 Query 65843 GGACGATGACGCAAATTGGA-ACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGAT 65901 || ||||| ||| |||| || | | || ||||| | || || ||||||| ||| || Sbjct 38825 GGTCGATGTCGCTGATTGCTCACTTGT-GCTTCAGGAATCGGATAATAATTGAGATCAAT 38767 Query 65902 AATGCGATTCAAATTGCGTGTCACCACATGCACGATA-CGTCGCAATTGTTCGAAATCAA 65960 || || | ||| || || | | ||| ||| |||| | | || | || Sbjct 38766 GATTTTGTTGAGATTTTTCGTAACGATTTTTGTGATTTCGTAT-AATTTTGCAAATTGAA 38708 Query 65961 AATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGA 66020 | | ||| | || || ||||| || | | || | || || | Sbjct 38707 ATTCTTT-----------------CTGATAC-ACAAATTTTGACAATGCGATGGAAGCCA 38666 Query 66021 GGTTGCAGACAGCTATCTCGTCAGGAG-CGGTATACTCGACAATTTCGGTGCACAGATTA 66079 ||||| || || | || | |||| | | ||||||| ||||| ||| ||||| Sbjct 38665 AATTGCATACTGCCACTTCTTT-GGAGTCTGAGTACTCGATGATTTCACAGCAGAGATTG 38607 Query 66080 CTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTAC 66139 || | || ||||| || | |||||| ||||| || ||||| || || || ||||| Sbjct 38606 CTTGATCGAATGGTTCCAAGATTCTGCTGATTGGATTTACGATTACAAGCGTCTTTGTAA 38547 Query 66140 ATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGC-G 66198 | ||| ||||| || |||||||||| || || | ||||| ||| | | || | Sbjct 38546 AGCATATACGGCGTTCCGGTCTCAATCTGACTATCCAAAATGGCAAACCACA-ATTGCTG 38488 Query 66199 TGCCTTCACCGTACGTACCGCCCTACCTTTGCGT-TCGTAATGTTCGTAGAGGTGTTCGA 66257 || || || || | | | | | |||| | ||||| | ||| || | || | Sbjct 38487 GGCTTTGACAGT-CTTTCGGGCAATGTTTTGAGACTCGTACTTTTCATATAACGCATCAA 38429 Query 66258 AG--GATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCA 66315 | | ||| ||||| || | || | |||| || || ||||| | | ||| Sbjct 38428 ATTCGCTTC--CCCATGTCTCATAAAGTCGTGGAGCCTCGTTCGGACAGAATAAACTCCA 38371 Query 66316 ATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAG 66375 || | | ||| ||||| |||||| ||||| || ||||| || || || || | Sbjct 38370 TTCTTGGTTGTCTTCCACACGTTTCATAAACAGATCGGGGATCCAAAGAGCATAAAACAA 38311 Query 66376 ATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGAT 66435 ||| || ||||| || ||| | || ||||| || || | || || ||||||||||| Sbjct 38310 ATCTCGAGCTCGATGGAGTTCATTTCCATGATTCTTACGTAGTTCCAGAAACTCAAAGAT 38251 Query 66436 GTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTG 66495 || || ||||| || || || || || || || || || | || || || || ||||| Sbjct 38250 ATCCGCGTGCCAGGGCTCTAGATAAATTGCAAAAGACCCTTTCCGCTTCCCACCGCCTTG 38191 Query 66496 GTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTT 66555 || ||||| ||||| | ||||| || || | ||| || || | || || || | Sbjct 38190 ATCAACGTATCGAGCTGTGTCATTGAACACCCGAAGCATTGGAACAATTCCATTCGAACT 38131 Query 66556 GCCATTGGTGCCG 66568 ||||| || ||| Sbjct 38130 TCCATTCGTCCCG 38118 >seq1503 Length=45688 Score = 116 bits (128), Expect = 3e-21 Identities = 367/563 (65%), Gaps = 18/563 (3%) Strand=Plus/Minus Query 61084 GATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGAT 61143 || |||||| |||||| || || || || || ||| ||||| | || || ||||| Sbjct 34849 GAGATTTGGGACATGTATAAGAAAGCAGAGGCAAGCTTTTGGACCGCAGAAGAAATCGAT 34790 Query 61144 TTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAA 61203 ||| | ||||||||||||||| | ||||| | |||| ||| || || ||| Sbjct 34789 TTGGTGCATGACATGAATGACTGGCTTAATATATCGGACAATGAAAGACACTTTATCAAA 34730 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTT----ATTGGA 61259 || |||||||| |||||||| || || || || |||||||| ||| | || || Sbjct 34729 CACGTGTTGGCCTTCTTTGCAGCCAGTGATGGAATTGTCAATGAAAATCTCGCCAT--GA 34672 Query 61260 ACGTTTCGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTG 61318 | |||| |||| ||||| || | | || || || || || ||||| || || |||| Sbjct 34671 A--TTTC-AGCAGTGAGGTTCAGATCCCCGAAGCTCGATGCTTTTACGGATTTCAAATTG 34615 Query 61319 CCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC 61378 | || || ||| | |||||||| |||| | | || ||||| ||||||| || | Sbjct 34614 CAATAGAAAATATACACTCGGAAGTGTATTCGTTATTGATTGATACATACATCAAAGATC 34555 Query 61379 GGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAG 61438 | ||| | | || | || || || || || ||| || | |||| Sbjct 34554 CAACTGAAAAACAGCATTTACTGTGCGCGATTGAAACAATCCCGTGCGTTACCAATAAAG 34495 Query 61439 CGGATTGGGCCTTCAATTG----GATCACCAGTACAACGGCTACATTTGGTGAACGATTG 61494 | | ||||| || || || |||| |||| || | |||| ||| || || Sbjct 34494 CACAATGGGCGTTGAAATGGTGCGATCCAAAGTA----TGCCTCGTTTGCAGAAAGAGTG 34439 Query 61495 CTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGG 61554 | || ||||||| ||||| || | |||||| ||||| || | | || |||||| Sbjct 34438 GTAGCCTTTGCGGCCGTCGAAGGAATCTTTTTCTCCGGATCATTCTGCTCTATATTTTGG 34379 Query 61555 TTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGAC 61614 |||||||||| ||| | ||||| || || ||| |||||| | || || || Sbjct 34378 CTGAAGAAACGAGGATTGATGCCTGGACTTTGCTTTTCAAATGAGCTCATCAGTCGTGAT 34319 Query 61615 GAGGGCATGCATTGTGATTTTGC 61637 || || | |||||||| ||||| Sbjct 34318 GAAGGACTACATTGTGACTTTGC 34296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397539974437760