Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq3059 163 5e-38 seq2622 114 2e-23 seq4614 107 4e-21 seq1804 93.3 8e-17 seq3801 75.2 2e-11 >seq3059 Length=271 Score = 163 bits (180), Expect = 5e-38 Identities = 155/194 (80%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 126 AGCATGGAATAATAGAATAGGACGTGCG-GTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 |||||||||||||| ||| ||| | | | |||||||||||||||| | ||| || Sbjct 267 AGCATGGAATAATAAGATACGACCTTGGTGGTCTATTTTGTTGGTTTGCAC-ACCAGGGT 209 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||||||||| ||| |||||| | |||| | |||||||||||||||||||| Sbjct 208 AATGATTAATAGGGACAGTTGGGGGTATTCATATTTCAGCGTCAGAGGTGAAATTCTTGG 149 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 || | ||||| | || |||||||| || ||||||||||||||||||||||| || Sbjct 148 ATCGTTGGAAGATGAGCTTAGGCGAAAGCATTTACCAAGGATGTTTTCATTAATCA-AGA 90 Query 305 ACGAAAGTTAGGGG 318 |||||||||||||| Sbjct 89 ACGAAAGTTAGGGG 76 >seq2622 Length=418 Score = 114 bits (126), Expect = 2e-23 Identities = 88/103 (85%), Gaps = 5/103 (5%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGCA 129 |||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||| Sbjct 303 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTAGCA 362 Query 130 TGGAATAATAGAATA-GGACGTGCGGTTCTATTTTGTTGGTTT 171 |||||||||| ||| || | || | |||||||||||||||| Sbjct 363 TGGAATAATAAGATACGGCCTTGGTGGTCTATTTTGTTGGTTT 405 >seq4614 Length=170 Score = 107 bits (118), Expect = 4e-21 Identities = 86/102 (84%), Gaps = 4/102 (4%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC---GAATACATTAGCAT 130 |||||| |||||||||||||||||| ||||||||| ||||||| |||||| | ||||| Sbjct 115 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCATTGAATACTTCAGCAT 56 Query 131 GGAATAATAGAATAGGA-CGTGCGGTTCTATTTTGTTGGTTT 171 ||||||||| ||| || | || | |||||||||||||||| Sbjct 55 GGAATAATAAGATACGACCTTGGTGGTCTATTTTGTTGGTTT 14 >seq1804 Length=1677 Score = 93.3 bits (102), Expect = 8e-17 Identities = 91/116 (78%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 198 GATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGAC 257 || ||| |||||| | |||| | |||||||||||||||||||||| | |||| Sbjct 304 GACAGTTGGGGGTATTCATATTTCAACGTCAGAGGTGAAATTCTTGGATCGTTGAAAGAT 245 Query 258 TAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 | || |||||||| || ||||||||||||||||||||||| ||||||||||| Sbjct 244 GAGCTTAGGCGAAAGCATTTACCAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 190 >seq3801 Length=200 Score = 75.2 bits (82), Expect = 2e-11 Identities = 49/53 (92%), Gaps = 1/53 (2%) Strand=Plus/Minus Query 266 GCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||| || ||||||||||||||||||||||| |||||||||||||||| Sbjct 187 GCGAAAGCATTTACCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTAGGGG 136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915152263168